Job Description P00509 Confidence 99.89% Date Thu Jan 5 10:56:40 GMT 2012 Rank 158 Aligned Residues 357 % Identity 14% Template c3hbxB_ PDB info PDB header:lyase Chain: B: PDB Molecule:glutamate decarboxylase 1; PDBTitle: crystal structure of gad1 from arabidopsis thaliana Resolution 2.67 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	D	P	I	L	G	L	A	D	L	F	R	A	D	E	R	P	G	K	I	N	L	G	I	G	V	Y	K	D	E	T	G	K	T	P	V	L	T	S	V	K	K	A	E	Q	Y	L	L	E	N	E	T	T	K	N	Y	L	G	I	D	G	I	P	E	F	G	R	C	T	Q	E	L	L	F	G	K	G	S	A
Query Conservation
Alig confidence																													.	.	.	.	.	.																							.
Template Conservation																													.	.	.	.	.	.																							.
Template Sequence		P	K	E	A	A	Y	Q	I	I	N	D	E	L	M	L	D	G	N	P	R	L	N	L	A	S	F	V	.	.	.	.	.	.	T	T	W	M	E	P	E	C	D	K	L	I	M	S	S	I	N	K	N	Y	V	D	.	M	D	E	Y	P	V	T	T	E	L	Q	N	R	C	V	N	M	I	A	H	L	F	N	A
Template Known Secondary structure														G	G	G	S			G	G	G	B	T	T			S	.	.	.	.	.	.															T	T	T		B	T	T		.	T	T	T																			T	T
Template Predicted Secondary structure																													.	.	.	.	.	.																							.
Template SS confidence
		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.							.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.		.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
		89	90	.	.	.	.	.	.	.		.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.												.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure											.																			.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.																			.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	I	N	D	K	R	A	R	T	.	A	Q	T	P	G	G	T	G	A	L	R	V	A	A	D	F	L	A	.	.	.	.	.	.	.	.	.	.	.	K	N	T	S	V	K	R	V	W	V	S	N	P	S	W	P	N	H	K	S	V	F	N	S	A	G	L	E	V	R	E	Y	A	Y	Y	D	A	E	N	H	T
Query Conservation											.																			.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.																			.	.	.	.	.	.	.	.	.	.	.																																			.
Template Conservation																																																																											.
Template Sequence		P	L	E	E	A	E	T	A	V	G	V	G	T	V	G	S	S	E	A	I	M	L	A	G	L	A	F	K	R	K	W	Q	N	K	R	K	A	E	G	K	P	V	D	K	P	N	I	V	T	G	A	N	V	Q	V	C	W	E	K	F	A	R	Y	F	E	V	E	L	K	E	V	K	L	.	S	E	G	Y	Y	V
Template Known Secondary structure					T	T									S	S																							T	T				S								T	T												T	T									.	B	T	T	B		S
Template Predicted Secondary structure																																																																											.
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.		.	.	.	.	.	.
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.							.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure																																																		.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.	.
Query Sequence		L	D	F	D	A	L	I	N	S	L	N	E	A	Q	A	G	D	V	V	L	F	H	G	C	C	H	N	P	T	G	I	D	P	T	L	E	Q	W	Q	T	L	A	Q	L	S	V	E	K	.	.	.	.	.	.	G	W	L	P	L	F	D	F	A	Y	Q	G	F	A	R	G	L	E	E	D	A	E	G	L	R	A
Query Conservation																																																		.	.	.	.	.	.
Alig confidence												.	.	.																						.	.	.												.	.	.	.	.	.																									.	.
Template Conservation												.	.	.																						.	.	.																																										.	.
Template Sequence		M	D	P	Q	Q	A	V	D	M	V	.	.	.	D	E	N	T	I	C	V	A	A	I	L	G	S	T	L	N	G	E	F	E	D	.	.	.	V	K	L	L	N	D	L	L	V	E	K	N	K	E	T	G	W	D	T	P	I	H	V	D	A	A	S	G	G	F	I	A	P	F	L	Y	P	E	L	E	W	.	.
Template Known Secondary structure												.	.	.		T	T								B	S		T	T	T			B			.	.	.																										T	T	G	G	G	T						S	S				.	.
Template Predicted Secondary structure												.	.	.																						.	.	.																																										.	.
Template SS confidence
		190	.	.	.	.	.	.	.	.	.				200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220				.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.										.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.	.	.	.	.
Query Sequence		F	A	A	M	H	K	E	L	I	V	A	S	S	Y	S	K	N	F	G	L	Y	N	E	R	V	G	A	C	T	L	V	A	A	D	S	E	T	V	D	R	A	F	S	Q	M	K	A	A	I	R	A	.	.	.	.	.	.	.	.	.	N	Y	S	N	P	P	A	H	G	A	S	V	V	A	T	I	L	S	N	D
Query Conservation																																																					.	.	.	.	.	.	.	.	.
Alig confidence		.	.																																.	.	.	.	.														.	.	.	.	.	.	.	.	.
Template Conservation		.	.																																.	.	.	.	.
Template Sequence		.	.	D	F	R	L	P	L	V	K	S	I	N	V	S	G	H	Y	G	L	V	Y	A	G	I	G	W	V	I	W	R	N	K	.	.	.	.	.	E	D	L	P	E	E	L	I	F	H	I	N	Y	L	G	A	D	Q	P	T	F	T	L	N	F	S	K	G	S	S	Q	V	I	A	Q	Y	Y	Q	L	I	R	L
Template Known Secondary structure		.	.	S	T	T	S	T	T															S	S							S	S	G	.	.	.	.	.	G	G	S		G	G	G						S	S	S	S							S			S		B	S
Template Predicted Secondary structure		.	.																																.	.	.	.	.
Template SS confidence
				262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.						.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.			.	.	.	.	.	.	.	.	350	.						.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
Predicted Secondary structure																																										.	.											.	.	.	.	.																							.
Query SS confidence																																										.	.											.	.	.	.	.																							.
Query Sequence		A	L	R	A	I	W	E	Q	E	L	T	D	M	R	Q	R	I	Q	R	M	R	Q	L	F	V	N	T	L	Q	E	K	G	A	N	R	D	F	S	F	I	.	.	I	K	Q	N	G	M	F	S	F	S	.	.	.	.	.	G	L	T	K	E	Q	V	L	R	L	R	E	E	F	G	V	Y	A	V	A	S	G	.
Query Conservation																																										.	.											.	.	.	.	.																							.
Alig confidence			.	.	.	.	.																												.	.	.					.	.											.	.	.	.	.																							.
Template Conservation			.	.	.	.	.																												.	.	.
Template Sequence		G	.	.	.	.	.	H	E	G	Y	R	N	V	M	E	N	C	R	E	N	M	I	V	L	R	E	G	L	E	K	T	E	R	.	.	.	F	N	I	V	S	K	D	E	G	V	P	L	V	A	F	S	L	K	D	S	S	C	H	T	E	F	E	I	S	D	M	L	R	R	Y	G	W	I	V	P	A	Y	T	M
Template Known Secondary structure			.	.	.	.	.																								T	T	T		.	.	.					S		S	S	S	S	S							S	S		S	S												T	T	T		B
Template Predicted Secondary structure			.	.	.	.	.																												.	.	.
Template SS confidence
		336						.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.				.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.
												374	.	.	.		.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.					.
Query SS confidence		.	.	.	.	.	.	.	.	.	.					.
Query Sequence		.	.	.	.	.	.	.	.	.	.	R	V	N	V	.	A	G	M	T	P	D	N	M	A	P	L	C	E	A	I	V	A	V	L
Query Conservation		.	.	.	.	.	.	.	.	.	.					.
Alig confidence		.	.	.	.	.	.	.	.	.	.					.
Template Conservation
Template Sequence		P	P	N	A	Q	H	I	T	V	L	R	V	V	I	R	E	D	F	S	R	T	L	A	E	R	L	V	I	D	I	E	K	V	M
Template Known Secondary structure			T	T		T	T										T	T
Template Predicted Secondary structure
Template SS confidence
		408	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.

No model constructed - rank, confidence too low