Phyre 2 alignment of P00509 with c3fkdC

Job Description P00509
Confidence 100.00% Date Thu Jan 5 10:56:40 GMT 2012

Rank 79 Aligned Residues 308

% Identity 19% Template c3fkdC_

PDB info PDB header:lyase Chain: C: PDB Molecule:l-threonine-o-3-phosphate decarboxylase; PDBTitle: the crystal structure of l-threonine-o-3-phosphate2 decarboxylase from porphyromonas gingivalis

Resolution 2.50 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	K	I	N	L	G	I	G	V	Y	K	D	E	T	G	K	T	P	V	L	T	S	V	K	K	A	E	Q	Y	L	L	E	N	E	T	T	K	N	Y	L	G	I	D	G	I	P	E	F	G	R	C	T	Q	E	L	L	F	G	K	G	S	A	L	I	N	D	K	R	A	R	T	A	Q	T	P	G	G	T	G	A	L
Query Conservation
Alig confidence									.	.	.	.	.	.																				.	.									.													.	.	.	.	.	.							.	.
Template Conservation									.	.	.	.	.	.																				.	.									.													.	.	.	.	.	.							.	.
Template Sequence	I	V	N	F	S	T	T	V	.	.	.	.	.	.	W	T	D	G	D	D	H	L	E	K	H	L	V	E	N	L	N	C	I	.	.	R	H	Y	P	E	P	D	A	.	G	T	L	R	Q	X	L	A	K	R	N	S	.	.	.	.	.	.	V	D	N	N	A	I	.	.	L	V	T	N	G	P	T	A	A	F
Template Known Secondary structure					S			S	.	.	.	.	.	.															T	G	G	G	G	.	.	G	S				T	T		.											T	T	.	.	.	.	.	.			G	G	G		.	.				S
Template Predicted Secondary structure									.	.	.	.	.	.																				.	.									.													.	.	.	.	.	.							.	.
Template SS confidence
	17	.	.	20	.	.	.	.							.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.			.	.	.	.	.	.	50	.		.	.	.	.	.	.	.	.	60	.	.	.							.	.	.	.	.	.			70	.	.	.	.	.	.	.	.	.

	108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	R	V	A	A	D	F	L	A	K	N	T	S	V	K	R	V	W	V	S	N	P	S	W	P	N	H	K	S	V	F	N	S	A	G	L	E	V	R	E	Y	A	Y	Y	D	A	E	N	H	T	L	D	F	D	A	L	I	N	S	L	N	E	A	Q	A	G	D	V	V	L	F	H	G	C	C	H	N	P	T	G	I
Query Conservation
Alig confidence								.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	Y	Q	I	A	Q	A	F	.	.	.	.	R	G	S	R	S	L	I	A	I	P	S	F	A	E	Y	E	D	A	C	R	X	Y	E	H	E	V	C	F	Y	P	S	N	E	D	.	.	.	.	.	.	.	.	.	.	.	.	I	G	E	A	D	F	S	N	X	D	F	C	W	L	C	N	P	N	N	P	D	G	R
Template Known Secondary structure							T	.	.	.	.	T	T								S												T	T								T	T	S		.	.	.	.	.	.	.	.	.	.	.	.	G	G	G	S			T	T		S						S	S		T	T	T
Template Predicted Secondary structure								.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	81	.	.	.	.	.	.					.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.													.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.

	188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	D	P	T	L	E	Q	W	Q	T	L	A	Q	L	S	V	E	K	G	W	L	P	L	F	D	F	A	Y	Q	G	F	A	R	G	L	E	E	D	A	E	G	L	R	A	F	A	A	M	H	K	E	L	I	V	A	S	S	Y	S	K	N	F	G	L	Y	N	E	R	V	G	A	C	T	L	V	A	A	D	S	E	T
Query Conservation
Alig confidence											.	.																						.	.	.	.
Template Conservation											.	.																						.	.	.	.
Template Sequence	L	L	Q	R	T	E	I	L	R	L	.	.	L	N	D	H	P	D	T	T	F	V	L	D	Q	S	Y	V	S	F	T	T	E	.	.	.	.	E	V	I	R	P	A	D	I	K	G	R	K	N	L	V	X	V	Y	S	F	S	H	A	Y	G	I	P	G	L	R	I	G	Y	I	V	A	N	K	D	F	X	K	R
Template Known Secondary structure											.	.					T	T	S							T	T	G	G	G		S	S	.	.	.	.					G	G	G	G	T	T		S	S							S	T	T	T	S	S		G	G	G
Template Predicted Secondary structure											.	.																						.	.	.	.
Template SS confidence
	145	.	.	.	.	150	.	.	.	.			.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.					.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.

	268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	V	D	R	A	F	S	Q	M	K	A	A	I	R	A	N	Y	S	N	P	P	A	H	G	A	S	V	V	A	T	I	L	S	N	D	A	L	R	A	I	W	E	Q	E	L	T	D	M	R	Q	R	I	Q	R	M	R	Q	L	F	V	N	T	L	Q	E	K	G	A	N	R	D	F	S	F	I	I	K	Q	N	G	M
Query Conservation
Alig confidence					.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.																											.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.																											.	.	.	.
Template Sequence	V	A	A	F	.	.	.	.	.	.	.	.	.	S	T	P	W	A	V	N	A	L	A	I	E	A	A	K	F	I	L	I	H	.	.	.	.	.	.	.	P	A	Q	F	T	L	P	I	R	K	W	Q	R	N	T	V	D	F	I	T	A	L	N	R	L	D	.	.	.	.	G	V	E	V	H	P	S	G	T	T
Template Known Secondary structure			T	T	.	.	.	.	.	.	.	.	.			T	T		S															.	.	.	.	.	.	.																									S	T	.	.	.	.	T							S	S	S
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.																											.	.	.	.
Template SS confidence
	219	220	.	.										.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.								.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.					.	270	.	.	.	.	.	.	.	.

	348	.	350	.					.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.											.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.																							.	.	.	.	.	.	.	.	.	.
Query SS confidence					.	.	.	.																							.	.	.	.	.	.	.	.	.	.
Query Sequence	F	S	F	S	.	.	.	.	G	L	T	K	E	Q	V	L	R	L	R	E	E	F	G	V	Y	A	V	A	S	G	.	.	.	.	.	.	.	.	.	.	R	V	N	V	A	G	M	T	P	D	N	M	A	P	L	C	E	A	I	V	A	V	L
Query Conservation					.	.	.	.																							.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.																							.	.	.	.	.	.	.	.	.	.						.	.
Template Conservation																																														.	.
Template Sequence	F	F	L	L	R	L	K	K	G	T	A	A	E	L	K	K	Y	X	L	E	E	Y	N	X	L	I	R	D	A	S	N	F	R	G	L	D	E	S	Y	V	R	I	T	T	Q	.	.	R	P	A	Q	N	Q	L	F	I	K	A	L	E	T	F	L
Template Known Secondary structure							S	S	S												T	T								T	T	S	T	T			T	T								.	.
Template Predicted Secondary structure																																														.	.
Template SS confidence
	279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.			.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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