Job Description P00509 Confidence 100.00% Date Thu Jan 5 10:56:40 GMT 2012 Rank 36 Aligned Residues 350 % Identity 14% Template c3ezsB_ PDB info PDB header:transferase Chain: B: PDB Molecule:aminotransferase aspb; PDBTitle: crystal structure of aminotransferase aspb (np_207418.1) from2 helicobacter pylori 26695 at 2.19 a resolution Resolution 2.19 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.		.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure															.
Query SS confidence															.
Query Sequence		P	A	D	P	I	L	G	L	A	D	L	F	R	.	A	D	E	R	P	G	K	I	N	L	G	I	G	V	Y	K	D	E	T	G	K	T	P	V	L	T	S	V	K	K	A	E	Q	Y	L	L	E	N	E	T	T	K	N	Y	L	G	I	D	G	I	P	E	F	G	R	C	T	Q	E	L	L	F	G	K	G	S
Query Conservation															.
Alig confidence															.														.	.	.	.	.																					.	.
Template Conservation																													.	.	.	.	.																					.	.
Template Sequence		E	P	Y	P	F	E	R	L	R	A	L	L	K	E	I	T	P	K	K	R	G	L	D	L	G	I	G	.	.	.	.	.	E	P	Q	F	E	T	P	K	F	I	Q	D	A	L	K	N	H	T	H	S	.	.	L	N	I	Y	P	K	S	A	F	E	E	S	L	R	A	A	Q	R	G	F	F	K	R	R	F	K
Template Known Secondary structure														T	T				S	S				B					.	.	.	.	.	S			S												T	T	G	G	G	.	.	G	G	S				T	T																		S
Template Predicted Secondary structure																													.	.	.	.	.																					.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30						.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50			.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	I	N	D	K	R	A	R	T	A	Q	T	P	G	G	T	G	A	L	R	V	A	A	D	F	L	A	K	N	T	S	V	K	R	V	W	V	S	N	P	S	W	P	N	H	K	S	V	F	N	S	A	G	L	E	V	R	E	Y	A	Y	Y	D	A	E	N	H	T	L	D	F	D	A	L	I	N	S	L	N
Query Conservation
Alig confidence										.	.																																																																					.	.
Template Conservation										.	.																																																																					.	.
Template Sequence		I	E	L	K	E	N	E	L	.	.	I	S	T	L	G	S	R	E	V	L	F	N	F	P	S	F	V	L	F	D	Y	Q	N	P	T	I	A	Y	P	N	P	F	Y	Q	I	Y	E	G	A	A	K	F	I	K	A	K	S	L	L	X	P	L	T	K	E	N	D	F	T	P	S	L	N	E	K	E	L	Q	.	.
Template Known Secondary structure						G	G	G		.	.				S	S	S												T	T	T		S	S								S			T									T	T										G	G	G	T	T											.	.
Template Predicted Secondary structure										.	.																																																																					.	.
Template SS confidence
		77	.	.	80	.	.	.	.			.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230				.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure																																																																	.	.	.
Query SS confidence																																																																	.	.	.
Query Sequence		E	A	Q	A	G	D	V	V	L	F	H	G	C	C	H	N	P	T	G	I	D	P	T	L	E	Q	W	Q	T	L	A	Q	L	S	V	E	K	G	W	L	P	L	F	D	F	A	Y	Q	G	F	A	R	G	L	E	E	D	A	E	G	L	R	A	.	.	.	F	A	A	M	H	K	E	L	I	V	A	S	S	Y
Query Conservation																																																																	.	.	.
Alig confidence		.	.	.	.																																																												.	.	.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	E	V	D	L	V	I	L	N	S	P	N	N	P	T	G	R	T	L	S	L	E	E	L	I	S	W	V	K	L	A	L	K	H	D	F	I	L	I	N	D	E	C	Y	S	E	I	Y	E	N	T	P	P	P	S	L	L	E	A	C	X	L	A	G	N	E	A	F	K	N	V	L	V	I	H	S	L
Template Known Secondary structure		.	.	.	.			S						S	S		T	T	T																			T	T								T	T	T	T		B	S	S	S												T	T		T	T		T	T							S
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	K	N	F	G	L	Y	N	E	R	V	G	A	C	T	L	V	A	A	D	S	E	T	V	D	R	A	F	S	Q	M	K	A	A	I	R	A	N	Y	S	N	P	P	A	H	G	A	S	V	V	A	T	I	L	S	N	D	A	L	R	A	I	W	E	Q	E	L	T	D	M	R	Q	R	I	Q	R	M	R	Q	L
Query Conservation
Alig confidence																				.	.	.	.	.	.	.																																.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.	.																																.	.	.	.	.	.	.
Template Sequence		S	K	R	S	S	A	P	G	L	R	S	G	F	I	A	G	D	S	.	.	.	.	.	.	.	R	L	L	E	K	Y	K	A	F	R	A	Y	L	G	Y	T	S	A	N	A	I	Q	K	A	S	E	A	A	W	L	D	.	.	.	.	.	.	.	D	R	H	A	E	F	F	R	N	I	Y	A	N	N	L	K	L
Template Known Secondary structure						T		G	G	G										.	.	.	.	.	.	.																																.	.	.	.	.	.	.	S
Template Predicted Secondary structure																				.	.	.	.	.	.	.																																.	.	.	.	.	.	.
Template SS confidence
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.								.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.								.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.			.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.													.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
Predicted Secondary structure																																.	.																				.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																.	.																				.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	V	N	T	L	Q	E	K	G	A	N	R	D	F	S	F	I	I	K	Q	N	G	M	F	S	F	S	G	L	T	.	.	K	E	Q	V	L	R	L	R	E	E	F	G	V	Y	A	V	A	S	G	.	.	.	.	.	.	.	.	.	.	.	.	R	V	N	V	A	G	M	T	P	D	N	M	A	P	L	C	E
Query Conservation																																.	.																				.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.																		.	.																				.	.	.	.	.	.	.	.	.	.	.	.						.
Template Conservation							.	.	.	.	.	.	.	.																																																								.
Template Sequence		A	R	K	I	F	.	.	.	.	.	.	.	.	K	N	T	L	I	Y	P	Y	S	F	Y	V	Y	L	P	V	Q	N	G	E	N	F	A	K	T	L	Y	Q	N	E	G	I	I	T	L	P	A	L	Y	L	G	R	N	R	I	G	A	D	Y	V	R	L	A	L	V	.	Y	D	T	P	L	L	E	K	P	L	E
Template Known Secondary structure						S	.	.	.	.	.	.	.	.	T	T					S	B	S	S							S																B				G	G	G	G		S	T	T	T	T	T	T								.	S
Template Predicted Secondary structure							.	.	.	.	.	.	.	.																																																								.
Template SS confidence
		295	.	.	.	.									300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.		.	.	.	.	.	360	.	.	.	.	.
		391	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	V	A	V	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	I	E	T	Y	R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		366	.	.	.	370	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions