Job Description P00509 Confidence 100.00% Date Thu Jan 5 10:56:40 GMT 2012 Rank 25 Aligned Residues 359 % Identity 18% Template c3ez1A_ PDB info PDB header:transferase Chain: A: PDB Molecule:aminotransferase mocr family; PDBTitle: crystal structure of putative aminotransferase (mocr family)2 (yp_604413.1) from deinococcus geothermalis dsm 11300 at 2.60 a3 resolution Resolution 2.60 Å

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		12	.	.	.	.	.	.	.	20	.	.	.			.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.								.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure														.	.																																							.	.	.	.	.	.	.
Query SS confidence														.	.																																							.	.	.	.	.	.	.
Query Sequence		P	I	L	G	L	A	D	L	F	R	A	D	.	.	E	R	P	G	K	I	N	L	G	I	G	V	Y	K	D	E	T	G	K	T	P	V	L	T	S	V	K	K	A	E	Q	Y	L	L	E	N	E	T	.	.	.	.	.	.	.	T	K	N	Y	L	G	I	D	G	I	P	E	F	G	R	C	T	Q	E	L	L
Query Conservation														.	.																																							.	.	.	.	.	.	.
Alig confidence														.	.												.	.	.	.	.																							.	.	.	.	.	.	.
Template Conservation																											.	.	.	.	.
Template Sequence		P	A	L	D	L	A	R	Q	A	Y	E	A	F	K	A	R	G	L	N	L	N	X	Q	R	G	.	.	.	.	.	Q	P	A	D	A	D	F	D	L	S	N	G	L	L	T	V	L	G	A	E	D	V	R	X	D	G	L	D	L	R	N	Y	P	G	G	V	A	G	L	P	S	A	R	A	L	F	A	G	Y	L
Template Known Secondary structure																		T					S				.	.	.	.	.									T	T	G	G	G	G	G	S			G	G	G				T	T			T	T	S	S		S		T	T													T
Template Predicted Secondary structure																											.	.	.	.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.						.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.												.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																			.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	G	K	G	S	A	L	I	N	D	K	R	A	R	T	A	Q	T	P	G	G	T	G	A	L	R	V	A	A	D	F	L	A	.	.	.	.	.	.	.	.	.	.	.	K	N	T	S	V	K	R	V	W	V	S	N	P	S	W	P	N	H	K	S	V	F	N	S	A	G	L	E	V	R	E	Y	A	Y	Y	D
Query Conservation																																			.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.							.	.																			.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.							.	.
Template Sequence		D	.	.	.	.	.	.	V	K	A	E	N	V	.	.	L	V	W	N	N	S	S	L	E	L	Q	G	L	V	L	T	F	A	L	L	H	G	V	R	G	S	T	G	P	W	L	S	Q	T	P	K	X	I	V	T	V	P	G	Y	D	R	H	F	L	L	L	Q	T	L	G	F	E	L	L	T	V	D	X	Q	S
Template Known Secondary structure		T	.	.	.	.	.	.	S		G	G	G		.	.				S	S																T			T	T		S	S		G	G	G	G									S													T										T
Template Predicted Secondary structure			.	.	.	.	.	.							.	.
Template SS confidence
		83							.	.	.	.	.	.			90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200		.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.																												.	.	.
Query SS confidence																																																			.																												.	.	.
Query Sequence		A	E	N	H	T	L	D	F	D	A	L	I	N	S	L	N	E	A	Q	A	G	D	V	V	L	F	H	G	C	C	H	N	P	T	G	I	D	P	T	L	E	Q	W	Q	T	L	A	Q	L	.	S	V	E	K	G	W	L	P	L	F	D	F	A	Y	Q	G	F	A	R	G	L	E	E	D	A	E	G	.	.	.
Query Conservation																																																			.																												.	.	.
Alig confidence			.	.	.																																														.																												.	.	.
Template Conservation			.	.	.
Template Sequence		D	.	.	.	G	P	D	V	D	A	V	E	R	L	A	G	T	D	P	S	V	K	G	I	L	F	V	P	T	Y	S	N	P	G	G	E	T	I	S	L	E	K	A	R	R	L	A	G	L	Q	A	A	A	P	D	F	T	I	F	A	D	D	A	Y	R	V	H	H	L	V	E	E	D	R	A	E	P	V	N	F
Template Known Secondary structure		T	.	.	.													S		T	T								S	S	S		T	T	T														T				S	S	T	T								T	T	S	S		B			S	S	S
Template Predicted Secondary structure			.	.	.
Template SS confidence
		155				.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
				228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	L	R	A	F	A	A	M	H	K	E	L	I	V	A	S	S	Y	S	K	N	F	G	L	Y	N	E	R	V	G	A	C	T	L	V	A	A	D	S	E	T	V	D	R	A	F	S	Q	M	K	A	A	I	R	A	N	Y	S	N	P	P	A	H	G	A	S	V	V	A	T	I	L	S	N	D	A	L	R	A
Query Conservation		.	.
Alig confidence		.	.																							.																								.	.	.	.	.	.	.																							.	.
Template Conservation																										.																								.	.	.	.	.	.	.																							.	.
Template Sequence		V	V	L	A	R	D	A	G	Y	P	D	R	A	F	V	F	A	S	T	S	K	I	T	F	.	A	G	A	G	L	G	F	V	A	S	S	E	D	N	I	R	W	L	S	K	Y	L	G	.	.	.	.	.	.	.	A	Q	S	I	G	P	N	K	V	E	Q	A	R	H	V	K	F	L	T	E	Y	P	.	.	G
Template Known Secondary structure									T		T	T	S							S	T	T	T	S		.	S	S	S	S																				.	.	.	.	.	.	.		S		S																	S	T	.	.	T
Template Predicted Secondary structure																										.																								.	.	.	.	.	.	.																							.	.
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.		.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.								.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300			.
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.			.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.				.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
Predicted Secondary structure																													.	.																						.	.	.																					.	.	.	.	.	.	.
Query SS confidence																													.	.																						.	.	.																					.	.	.	.	.	.	.
Query Sequence		I	W	E	Q	E	L	T	D	M	R	Q	R	I	Q	R	M	R	Q	L	F	V	N	T	L	Q	E	K	.	.	G	A	N	R	D	F	S	F	I	I	K	Q	N	G	M	F	S	F	S	G	L	.	.	.	T	K	E	Q	V	L	R	L	R	E	E	F	G	V	Y	A	V	A	S	G	.	.	.	.	.	.	.
Query Conservation																													.	.																						.	.	.																					.	.	.	.	.	.	.
Alig confidence																													.	.																						.	.	.																					.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	L	E	G	L	X	R	D	H	A	A	I	I	A	P	K	F	R	A	V	D	E	V	L	R	A	E	L	G	E	G	G	E	Y	A	T	W	T	L	P	K	G	G	Y	F	I	S	L	D	T	A	E	P	V	A	D	R	V	V	K	L	A	E	A	A	G	V	S	L	T	P	A	G	A	T	Y	P	A	G	Q
Template Known Secondary structure																														T	T	T	T	S	S							S	B	S	S							S	S	S												T	T						T	T	T	T	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
									374	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	R	V	N	V	A	G	M	T	P	D	N	M	A	P	L	C	E	A	I	V	A	V	L
Query Conservation		.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	P	H	N	R	N	L	R	L	A	P	T	R	P	P	V	E	E	V	R	T	A	X	Q	V	V	A	A	C	I
Template Known Secondary structure			S	S	S								S	S	S
Template Predicted Secondary structure
Template SS confidence
		382	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions