Job Description P00509 Confidence 100.00% Date Thu Jan 5 10:56:40 GMT 2012 Rank 37 Aligned Residues 360 % Identity 15% Template c3eibB_ PDB info PDB header:transferase Chain: B: PDB Molecule:ll-diaminopimelate aminotransferase; PDBTitle: crystal structure of k270n variant of ll-diaminopimelate2 aminotransferase from arabidopsis thaliana Resolution 1.85 Å

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		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.					.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.
Query SS confidence																																																			.	.	.	.
Query Sequence		I	L	G	L	A	D	L	F	R	A	D	E	R	P	G	K	I	N	L	G	I	G	V	Y	K	D	E	T	G	K	T	P	V	L	T	S	V	K	K	A	E	Q	Y	L	L	E	N	E	T	.	.	.	.	T	K	N	Y	L	G	I	D	G	I	P	E	F	G	R	C	T	Q	E	L	L	F	G	K	G	S	A
Query Conservation																																																			.	.	.	.
Alig confidence																								.	.	.	.	.																							.	.	.	.																											.
Template Conservation																								.	.	.	.	.																																																					.
Template Sequence		A	R	R	R	S	A	H	L	L	K	Y	P	D	A	Q	V	I	S	L	G	I	G	.	.	.	.	.	D	T	T	E	P	I	P	E	V	I	T	S	A	M	A	K	K	A	H	E	L	S	T	I	E	G	Y	S	G	Y	G	A	E	Q	G	A	K	P	L	R	A	A	I	A	K	T	F	Y	G	G	L	G	.
Template Known Secondary structure												S	T	T							S	S		.	.	.	.	.				S																	T	T	S	T	T	T				S			T	T															T	T	T	T	.
Template Predicted Secondary structure																								.	.	.	.	.																																																					.
Template SS confidence
		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.						.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.					.	.	.	.	160	.	.	.	.
Predicted Secondary structure																																																																					.	.	.	.
Query SS confidence																																																																					.	.	.	.
Query Sequence		L	I	N	D	K	R	A	R	T	A	Q	T	P	G	G	T	G	A	L	R	V	A	A	D	F	L	A	K	N	T	S	V	K	R	V	W	V	S	N	P	S	W	P	N	H	K	S	V	F	N	S	A	G	L	E	V	R	E	Y	A	Y	Y	D	A	E	N	H	.	.	.	.	T	L	D	F	D	A	L	I	N
Query Conservation																																																																					.	.	.	.
Alig confidence		.							.	.																		.	.	.																																							.	.	.	.
Template Conservation		.							.	.																		.	.	.
Template Sequence		.	I	G	D	D	D	V	.	.	F	V	S	D	G	A	K	C	D	I	S	R	L	Q	V	M	F	.	.	.	G	S	N	V	T	I	A	V	Q	D	P	S	Y	P	A	Y	V	D	S	S	V	I	M	G	Q	T	G	Q	F	N	T	D	V	Q	K	Y	G	N	I	E	Y	M	R	C	T	P	E	N	G	F	F
Template Known Secondary structure		.			G	G	G		.	.				S														.	.	.		T	T								S			T									T	T		S					T	T	T	T			T	T								T	T	T	T	T
Template Predicted Secondary structure		.							.	.																		.	.	.
Template SS confidence
			117	.	.	120	.	.			.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.				140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	N	E	A	Q	A	G	D	V	V	L	F	H	G	C	C	H	N	P	T	G	I	D	P	T	L	E	Q	W	Q	T	L	A	Q	L	S	V	E	K	G	W	L	P	L	F	D	F	A	Y	Q	G	F	A	R	G	L	E	E	D	A	E	G	L	R	A	F	A	A	M	H	K	E	L	I	V	A	S	S	Y
Query Conservation
Alig confidence																																																												.	.
Template Conservation																																																												.	.
Template Sequence		P	D	L	S	T	V	G	R	T	D	I	I	F	F	C	S	P	N	N	P	T	G	A	A	A	T	R	E	Q	L	T	Q	L	V	E	F	A	K	K	N	G	S	I	I	V	Y	D	S	A	Y	A	M	Y	M	S	D	D	N	.	.	P	R	S	I	F	E	I	P	G	A	E	E	V	A	M	E	T	A	S	F
Template Known Secondary structure				G	G	G					S						S	S		T	T	T																				T								T	T	G	G	G			S	S		.	.		S	S	G	G	G	S	T	T	G	G	G	T							S
Template Predicted Secondary structure																																																												.	.
Template SS confidence
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.			.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.		.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure																														.
Query SS confidence																														.
Query Sequence		S	K	N	F	G	L	Y	N	E	R	V	G	A	C	T	L	V	A	A	D	S	E	T	V	D	R	A	F	.	S	Q	M	K	A	A	I	R	A	N	Y	S	N	P	P	A	H	G	A	S	V	V	A	T	I	L	S	N	D	A	L	R	A	I	W	E	Q	E	L	T	D	M	R	Q	R	I	Q	R	M	R	Q
Query Conservation																														.
Alig confidence																														.																												.	.	.	.	.
Template Conservation																																																										.	.	.	.	.
Template Sequence		S	N	Y	A	G	F	T	G	V	R	L	G	W	T	V	I	P	K	K	L	L	Y	S	D	G	F	P	V	A	K	D	F	N	R	I	I	C	T	C	F	N	G	A	S	N	I	S	Q	A	G	A	L	A	C	L	T	.	.	.	.	.	P	E	G	L	E	A	M	H	K	V	I	G	F	Y	K	E	N	T	N
Template Known Secondary structure						S	T	T	T	T									T	T		B		T	T	S		B																S												S	S	.	.	.	.	.
Template Predicted Secondary structure																																																										.	.	.	.	.
Template SS confidence
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.						.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.					.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.											.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.																			.	.	.	.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.																			.	.	.	.	.	.	.	.	.	.
Query Sequence		L	F	V	N	T	L	Q	E	K	G	A	N	R	D	F	S	F	I	I	K	Q	N	G	M	F	S	F	S	G	L	T	K	.	.	.	.	E	Q	V	L	R	L	R	E	E	F	G	V	Y	A	V	A	S	G	.	.	.	.	.	.	.	.	.	.	R	V	N	V	A	G	M	T	P	D	N	M	A	P	L	C
Query Conservation																																		.	.	.	.																			.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.																			.	.	.	.																			.	.	.	.	.	.	.	.	.	.							.
Template Conservation												.	.	.	.																																																									.
Template Sequence		I	I	I	D	T	F	T	S	L	G	.	.	.	.	Y	D	V	Y	G	G	K	N	A	P	Y	V	W	V	H	F	P	N	Q	S	S	W	D	V	F	A	E	I	L	E	K	T	H	V	V	T	T	P	G	S	G	F	G	P	G	G	E	G	F	V	R	V	S	A	F	G	.	H	R	E	N	I	L	E	A	C
Template Known Secondary structure										T	T	.	.	.	.							S	S	S	S							T	T	S																				G	G	G	G		G	G	G	T	T								S	.
Template Predicted Secondary structure												.	.	.	.																																																									.
Template SS confidence
		344	.	.	.	.	.	350	.	.	.					.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.		410	.	.	.	.	.	.	.	.
		390	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	I	V	A	V	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	R	F	K	Q	L	Y
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		419	420	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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