Job Description P00509 Confidence 100.00% Date Thu Jan 5 10:56:40 GMT 2012 Rank 39 Aligned Residues 352 % Identity 15% Template c3d6kB_ PDB info PDB header:transferase Chain: B: PDB Molecule:putative aminotransferase; PDBTitle: the crystal structure of a putative aminotransferase from2 corynebacterium diphtheriae Resolution 2.00 Å

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		15	.	.	.	.	20	.	.	.	.	.	.	.	.		.	30	.	.	.	.	.	.	.	.	.	40	.	.	.									.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure																.																.	.	.	.	.	.	.	.
Query SS confidence																.																.	.	.	.	.	.	.	.
Query Sequence		G	L	A	D	L	F	R	A	D	E	R	P	G	K	.	I	N	L	G	I	G	V	Y	K	D	E	T	G	K	T	.	.	.	.	.	.	.	.	P	V	L	T	S	V	K	K	A	E	Q	Y	L	L	E	N	E	T	T	K	N	Y	L	G	I	D	G	I	P	E	F	G	R	C	T	Q	E	L	L	F	G	K
Query Conservation																.																.	.	.	.	.	.	.	.
Alig confidence																.							.	.	.	.	.	.	.			.	.	.	.	.	.	.	.																																								.	.	.
Template Conservation																							.	.	.	.	.	.	.																																																		.	.	.
Template Sequence		E	V	T	A	K	Y	A	E	L	K	A	K	N	L	S	L	D	L	T	R	G	.	.	.	.	.	.	.	K	P	S	A	E	Q	L	D	L	S	N	D	L	L	S	L	P	G	G	D	F	R	T	K	D	G	V	D	C	R	N	Y	G	G	L	L	G	I	A	D	I	R	E	L	W	A	E	A	L	.	.	.
Template Known Secondary structure													T						S				.	.	.	.	.	.	.	S								T	T	G	G	G	G	G		S	T	T			B		T	T			B	T	T	S	S			S	S														.	.	.
Template Predicted Secondary structure																							.	.	.	.	.	.	.																																																		.	.	.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.								.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.													.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	S	A	L	I	N	D	K	R	A	R	T	A	Q	T	P	G	G	T	G	A	L	R	V	A	A	D	F	L	A	.	.	.	.	.	.	.	.	.	.	.	.	K	N	T	S	V	K	R	V	W	V	S	N	P	S	W	P	N	H	K	S	V	F	N	S	A	G	L	E	V	R	E	Y	A	Y	Y	D	A	E
Query Conservation																																.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.								.	.																			.	.	.	.	.	.	.	.	.	.	.	.																																						.
Template Conservation		.	.	.								.	.																																																																				.
Template Sequence		.	.	.	G	L	P	A	D	L	V	.	.	V	A	Q	D	G	S	S	L	N	I	X	F	D	L	I	S	W	S	Y	T	W	G	N	N	D	S	S	R	P	W	S	A	E	E	K	V	K	W	L	C	P	V	P	G	Y	D	R	H	F	T	I	T	E	H	F	G	F	E	X	I	N	V	P	X	T	D	E	.
Template Known Secondary structure		.	.	.	T			G	G	G		.	.				S	S																			T	T		S	S		G	G	G	S	S									S												T	T										T	T	.
Template Predicted Secondary structure		.	.	.								.	.																																																																				.
Template SS confidence
					87	.	.	90	.	.	.			.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.		.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.					.	.	.
Predicted Secondary structure																																																					.																						.	.	.	.
Query SS confidence																																																					.																						.	.	.	.
Query Sequence		N	H	T	L	D	F	D	A	L	I	N	S	L	N	E	A	Q	A	G	D	V	V	L	F	H	G	C	C	H	N	P	T	G	I	D	P	T	L	E	Q	W	Q	T	L	A	Q	L	S	V	E	K	.	G	W	L	P	L	F	D	F	A	Y	Q	G	F	A	R	G	L	E	E	D	A	.	.	.	.	E	G	L
Query Conservation																																																					.																						.	.	.	.
Alig confidence		.	.														.																																				.																						.	.	.	.
Template Conservation		.	.														.
Template Sequence		.	.	G	P	D	X	G	V	V	R	E	L	V	K	D	.	P	Q	V	K	G	X	W	T	V	P	V	F	G	N	P	T	G	V	T	F	S	E	Q	T	C	R	E	L	A	E	X	S	T	A	A	P	D	F	R	I	V	W	D	N	A	Y	A	L	H	T	L	S	D	E	F	P	I	V	H	N	V	I	E	F
Template Known Secondary structure		.	.											T	T	S	.	T	T									S	S		T	T	T																		S	S	T	T								T	T	T	T		B	S	S	S
Template Predicted Secondary structure		.	.														.
Template SS confidence
				161	.	.	.	.	.	.	.	.	170	.	.	.		.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	F	A	A	M	H	K	E	L	I	V	A	S	S	Y	S	K	N	F	G	L	Y	N	E	R	V	G	A	C	T	L	V	A	A	D	S	E	T	V	D	R	A	F	S	Q	M	K	A	A	I	R	A	N	Y	S	N	P	P	A	H	G	A	S	V	V	A	T	I	L	S	N	D	A	L	R	A	I	W	E
Query Conservation
Alig confidence																						.																											.	.	.	.	.	.	.																				.	.	.
Template Conservation																						.																											.	.	.	.	.	.	.																				.	.	.
Template Sequence		A	Q	A	A	G	N	P	N	R	F	W	F	X	S	S	T	S	K	I	T	.	H	A	G	S	G	V	S	F	F	A	S	S	K	E	N	I	E	W	Y	A	S	H	A	N	V	R	.	.	.	.	.	.	.	G	I	G	P	N	K	L	N	Q	L	A	H	A	Q	F	F	G	D	V	.	.	.	A	G	L	K
Template Known Secondary structure						T		T	T								S	T	T	T	S	.		T	T	S	S																						.	.	.	.	.	.	.		S																S		.	.	.
Template Predicted Secondary structure																						.																											.	.	.	.	.	.	.																				.	.	.
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.		.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.								.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.				.	.	.	.
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.		.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.				.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
Predicted Secondary structure																										.																							.	.	.																				.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.																							.	.	.																				.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	E	L	T	D	M	R	Q	R	I	Q	R	M	R	Q	L	F	V	N	T	L	Q	E	K	.	G	A	N	R	D	F	S	F	I	I	K	Q	N	G	M	F	S	F	S	G	L	T	.	.	.	K	E	Q	V	L	R	L	R	E	E	F	G	V	Y	A	V	A	S	G	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																										.																							.	.	.																				.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.																							.	.	.																				.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	H	X	L	K	H	A	A	S	L	A	P	K	F	E	R	V	L	E	I	L	D	S	R	L	S	E	Y	G	V	A	K	W	T	S	P	T	G	G	Y	F	I	S	V	D	V	V	P	G	T	A	S	R	V	V	E	L	A	K	E	A	G	I	A	L	T	G	A	G	S	S	F	P	L	H	N	D	P	N	N
Template Known Secondary structure																											G	G	G		S							S	B	S	S							S	T	T												T	T						T	T	T	T	S	G	G	G			T	T	S
Template Predicted Secondary structure
Template SS confidence
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
					374	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	R	V	N	V	A	G	M	T	P	D	N	M	A	P	L	C	E	A	I	V	A	V	L
Query Conservation		.	.	.
Alig confidence		.	.	.
Template Conservation
Template Sequence		E	N	I	R	L	A	P	S	L	P	P	V	A	E	L	E	V	A	X	D	G	F	A	T	C	V
Template Known Secondary structure									S	S	S
Template Predicted Secondary structure
Template SS confidence
		387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions