Job Description P00509 Confidence 99.93% Date Thu Jan 5 10:56:40 GMT 2012 Rank 117 Aligned Residues 335 % Identity 14% Template c3caiA_ PDB info PDB header:transferase Chain: A: PDB Molecule:possible aminotransferase; PDBTitle: crystal structure of mycobacterium tuberculosis rv3778c2 protein Resolution 1.80 Å

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		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.								.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.
Query Sequence		V	Y	K	D	E	T	G	K	T	P	V	L	T	S	V	K	K	A	E	Q	Y	L	L	E	N	E	T	T	K	N	Y	L	.	.	.	.	.	.	.	G	I	D	G	I	P	E	F	G	R	C	T	Q	E	L	L	F	G	K	G	S	A	L	I	N	D	K	R	A	R	T	A	Q	T	P	G	G	T	G	A	L
Query Conservation																																		.	.	.	.	.	.	.
Alig confidence																																		.	.	.	.	.	.	.																		.	.	.	.	.	.							.	.
Template Conservation																																																										.	.	.	.	.	.							.	.
Template Sequence		V	H	F	D	A	P	A	G	M	L	I	P	D	S	V	A	T	T	V	S	T	A	F	R	R	S	G	A	S	T	V	G	A	H	P	S	A	R	R	S	A	A	V	L	D	A	A	R	E	A	V	A	D	L	V	N	.	.	.	.	.	.	A	D	P	G	G	V	.	.	V	L	G	A	D	R	A	V	L	L
Template Known Secondary structure					B	G	G	G																					S	S	S		S	S	S																						T	.	.	.	.	.	.			G	G	G		.	.				S
Template Predicted Secondary structure																																																										.	.	.	.	.	.							.	.
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.							.	.	.	.	80	.			.	.	.	.	.	.	.	.	90	.
		108	.	110	.	.	.	.		.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.					.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure									.																			.	.	.	.
Query SS confidence									.																			.	.	.	.
Query Sequence		R	V	A	A	D	F	L	.	A	K	N	T	S	V	K	R	V	W	V	S	N	P	S	W	P	N	.	.	.	.	H	K	S	V	F	N	S	A	G	L	E	V	R	E	Y	A	Y	Y	D	A	E	N	H	T	L	D	F	D	A	L	I	N	S	L	N	E	A	Q	A	G	D	V	V	L	F	H	G	C	C	H
Query Conservation									.																			.	.	.	.
Alig confidence									.																			.	.	.	.																					.														.	.	.
Template Conservation																																																				.														.	.	.
Template Sequence		S	L	L	A	E	A	S	S	S	R	A	G	L	G	Y	E	V	I	V	S	R	L	D	D	E	A	N	I	A	P	W	L	R	A	A	H	R	Y	G	A	K	V	K	W	A	E	V	D	I	E	.	T	G	E	L	P	T	W	Q	W	E	S	L	I	.	.	.	S	K	S	T	R	L	V	A	V	N	S	A	S
Template Known Secondary structure								T	G	G	G	G	B	T	T							T	T	S		G	G	G	T											B										T	T	.	T					G	G	G						.	.	.		T	T								S	B
Template Predicted Secondary structure																																																				.														.	.	.
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.		.	.	.	.	.	.	.	.	150	.	.	.	.				.	.	.	.	.	160	.	.	.	.	.	.	.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	P	T	G	I	D	P	T	L	E	Q	W	Q	T	L	A	Q	L	S	V	E	K	G	W	L	P	L	F	D	F	A	Y	Q	G	F	A	R	G	L	E	E	D	A	E	G	L	R	A	F	A	A	M	H	K	E	L	I	V	A	S	S	Y	S	K	N	F	G	L	Y	N	E	R	V	G	A	C	T	L	V	A
Query Conservation
Alig confidence															.	.	.																									.	.	.	.	.	.	.	.	.																							.	.
Template Conservation															.	.	.																									.	.	.	.	.	.	.	.	.																							.	.
Template Sequence		G	T	L	G	G	V	T	D	L	R	A	M	T	.	.	.	K	L	V	H	D	V	G	A	L	V	V	V	D	H	S	A	A	A	P	Y	R	L	L	D	.	.	.	.	.	.	.	.	.	I	R	E	T	D	A	D	V	V	T	V	N	A	H	A	W	G	G	P	P	I	G	.	.	A	M	V	F	R	D	P
Template Known Secondary structure		T	T	T		B	B								.	.	.						T	T								T	T	T	T	T	T					.	.	.	.	.	.	.	.	.							S						G	G	G	G	T	S		S			.	.					S
Template Predicted Secondary structure															.	.	.																									.	.	.	.	.	.	.	.	.																							.	.
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180				.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.										.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.			.	.	.	230	.	.	.
		263	.	.	.	.	.	.	270	.	.	.			.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.										.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
Predicted Secondary structure													.	.																										.	.	.	.	.	.	.	.	.
Query SS confidence													.	.																										.	.	.	.	.	.	.	.	.
Query Sequence		A	D	S	E	T	V	D	R	A	F	S	.	.	Q	M	K	A	A	I	R	A	N	Y	S	N	P	P	A	H	G	A	S	V	V	A	T	I	L	.	.	.	.	.	.	.	.	.	S	N	D	A	L	R	A	I	W	E	Q	E	L	T	D	M	R	Q	R	I	Q	R	M	R	Q	L	F	V	N	T	L	Q	E
Query Conservation													.	.																										.	.	.	.	.	.	.	.	.
Alig confidence													.	.																										.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	V	M	N	S	F	G	S	V	S	T	N	P	Y	A	T	G	P	A	R	L	E	I	G	V	H	Q	F	G	L	L	A	G	V	V	A	S	I	E	Y	L	A	A	L	D	E	S	A	R	G	S	R	R	E	R	L	A	V	S	M	Q	S	A	D	A	Y	L	N	R	V	F	D	Y	L	M	V	S	L	R	S
Template Known Secondary structure						T	S					S		T	T			G	G	G	G	G			S																			T	S	S	T	T			S	S																													T
Template Predicted Secondary structure
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
		332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.			.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.																		.	.	.	.	.		.	.	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure																						.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.
Query SS confidence																						.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.
Query Sequence		K	G	A	N	R	D	F	S	F	I	I	K	Q	N	G	M	F	S	F	S	.	.	G	L	T	K	E	Q	V	L	R	L	R	E	E	F	G	V	Y	A	V	A	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	R	V	N	V	.	A	G	M	T	P	D	N	M	A	P	L	C	E	A
Query Conservation																						.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.
Alig confidence																						.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.
Template Conservation
Template Sequence		L	P	L	V	M	L	I	G	R	P	E	A	Q	I	P	V	V	S	F	A	V	H	K	V	P	A	D	R	V	V	Q	R	L	A	D	N	G	I	L	A	I	A	N	T	G	S	R	V	L	D	V	L	G	V	N	D	V	G	G	A	V	T	V	G	L	A	H	Y	S	T	M	A	E	V	D	Q	L	V	R	A
Template Known Secondary structure			T	T								S	S	B		S							T	T	B												T	T								S								T	T	T	T	T	T									T	T
Template Predicted Secondary structure
Template SS confidence
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
		392	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	V	A	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	A	S	L
Template Known Secondary structure				T
Template Predicted Secondary structure
Template SS confidence
		394	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions