Job Description P00509 Confidence 99.83% Date Thu Jan 5 10:56:40 GMT 2012 Rank 193 Aligned Residues 329 % Identity 15% Template c3bs8A_ PDB info PDB header:isomerase Chain: A: PDB Molecule:glutamate-1-semialdehyde 2,1-aminomutase; PDBTitle: crystal structure of glutamate 1-semialdehyde aminotransferase2 complexed with pyridoxamine-5'-phosphate from bacillus subtilis Resolution 2.30 Å

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	N	L	G	I	G	V	Y	K	D	E	T	G	K	T	P	V	L	T	S	V	K	K	A	E	Q	Y	L	L	E	N	E	T	T	K	N	Y	L	G	I	D	G	I	P	E	F	G	R	C	T	Q	E	L	L	F	G	K	G	S	A	L	I	N	D	K	R	A	R	T	A	Q	T	P	G	G	T	G	A	L	R
Query Conservation
Alig confidence																		.	.																						.	.	.	.	.																	.	.	.					.	.
Template Conservation																		.	.																						.	.	.	.	.																	.	.	.					.	.
Template Sequence		I	D	Y	V	L	S	W	G	P	L	I	L	G	H	T	N	.	.	D	R	V	V	E	S	L	K	K	V	A	E	Y	G	T	S	F	G	A	P	T	.	.	.	.	.	E	V	E	N	E	L	A	K	L	V	I	D	R	V	P	S	.	.	.	V	E	I	V	.	.	R	M	V	S	S	G	T	E	A	T	M
Template Known Secondary structure				S	S	G	G	G	T	T		T	T		B	S		.	.															S			S	S			.	.	.	.	.														S	T	T	.	.	.		S			.	.				S
Template Predicted Secondary structure																		.	.																						.	.	.	.	.																	.	.	.					.	.
Template SS confidence
		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.			.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.						.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.				.	110	.	.			.	.	.	.	.	.	.	120	.	.	.
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.																					.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	A	A	D	F	L	A	K	N	T	S	V	K	R	V	W	V	S	N	P	S	W	P	N	H	K	S	V	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	S	A	G	L	E	V	R	E	Y	A	Y	Y	D	A	E	N	H	T	L	D	F	D	A	L	I	N	S	L	N	E
Query Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.
Template Conservation																																																														.	.	.	.	.	.	.
Template Sequence		S	A	L	R	L	A	R	G	Y	T	G	R	N	K	I	L	K	F	E	G	C	Y	H	G	H	G	D	S	L	L	I	K	A	G	S	G	V	A	T	L	G	L	P	D	S	P	G	V	P	E	G	I	A	K	N	T	I	T	V	P	.	.	.	.	.	.	.	Y	N	D	L	E	S	V	K	L	A	F	Q	Q
Template Known Secondary structure												T									T					S		G	G	G						S	S	S	S		B				S	S	T	T			T	T	S	S	T	T						.	.	.	.	.	.	.	T	T
Template Predicted Secondary structure																																																														.	.	.	.	.	.	.
Template SS confidence
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.								.	.	.	.	.	.	190	.	.	.	.	.	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure																						.
Query SS confidence																						.
Query Sequence		A	Q	A	G	D	V	V	L	F	H	G	C	C	H	N	P	T	G	I	D	.	P	T	L	E	Q	W	Q	T	L	A	Q	L	S	V	E	K	G	W	L	P	L	F	D	F	A	Y	Q	G	F	A	R	G	L	E	E	D	A	E	G	L	R	A	F	A	A	M	H	K	E	L	I	V	A	S	S	Y	S	K	N
Query Conservation																						.
Alig confidence																						.																																	.	.	.	.																.	.	.
Template Conservation																																																							.	.	.	.																.	.	.
Template Sequence		F	G	E	D	I	A	G	V	I	V	E	P	V	A	G	N	M	G	V	V	P	P	Q	E	G	F	L	Q	G	L	R	D	I	T	E	Q	Y	G	S	L	L	I	F	D	E	V	M	T	G	F	R	V	D	.	.	.	.	Y	N	C	A	Q	G	Y	F	G	V	T	P	D	L	T	.	.	.	C	L	G	K	V
Template Known Secondary structure			G	G	G								S	S	B		S	S	S		B				T	T													T								T	T	T	T	T	T	T	S	.	.	.	.	T	T						T	T				S			.	.	.				G	G
Template Predicted Secondary structure																																																							.	.	.	.																.	.	.
Template SS confidence
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.					250	.	.	.	.	.	.	.	.	.	260	.	.	.	.				.	.	.	.	.
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	G	L	Y	N	E	R	V	G	A	C	T	L	V	A	A	D	S	E	T	V	D	R	A	F	S	Q	M	K	A	A	I	R	A	N	Y	S	N	P	P	A	H	G	A	S	V	V	A	T	I	L	S	N	D	A	L	R	A	I	W	E	Q	E	L	T	D	M	R	Q	R	I	Q	R	M	R	Q	L	F	V	N
Query Conservation
Alig confidence				.																						.	.	.	.																												.	.	.	.	.
Template Conservation				.																						.	.	.	.																												.	.	.	.	.
Template Sequence		I	G	.	G	G	L	P	V	G	A	Y	G	G	K	A	E	I	M	E	Q	I	A	P	S	.	.	.	.	G	P	I	Y	Q	A	G	T	L	S	G	N	P	L	A	M	T	A	G	L	E	T	L	K	Q	L	T	.	.	.	.	.	P	D	S	Y	K	N	F	I	K	K	G	D	R	L	E	E	G	I	S	K
Template Known Secondary structure		G	G	.	T	T	S	S												T	T	B	T	T	T	.	.	.	.	S	S	B					S	S	T	T														T			.	.	.	.	.
Template Predicted Secondary structure				.																						.	.	.	.																												.	.	.	.	.
Template SS confidence
		270	.		.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.					.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.						320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.																	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.				.	380	.	.	.	.	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.
Query Sequence		T	L	Q	E	K	G	A	N	R	D	F	S	F	I	I	K	Q	N	G	M	F	S	F	S	G	L	T	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	Q	V	L	R	L	R	E	E	F	G	V	Y	A	V	A	S	G	R	V	N	V	A	.	.	.	G	M	T	P	D	N	M	A	P	L
Query Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.
Alig confidence									.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.
Template Conservation									.	.	.
Template Sequence		A	A	E	A	H	G	I	.	.	.	P	H	T	F	N	R	A	G	S	M	I	G	F	F	F	T	N	E	P	V	I	N	Y	E	T	A	K	A	S	D	L	K	L	F	A	S	Y	Y	K	G	M	A	N	E	G	V	F	L	P	P	S	Q	F	E	G	L	F	L	S	T	A	H	T	D	E	D	I	E	N	T
Template Known Secondary structure						T	T		.	.	.								T	T						S	S	S	S				S					T	T	S															T	T					S	S	S	S	S		B				T	T
Template Predicted Secondary structure									.	.	.
Template SS confidence
		340	.	.	.	.	.	.				.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
		389	390	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	E	A	I	V	A	V	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	Q	A	A	E	K	V	F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		417	.	.	420	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions