Job Description P00509 Confidence 100.00% Date Thu Jan 5 10:56:40 GMT 2012 Rank 53 Aligned Residues 346 % Identity 18% Template c3asaA_ PDB info PDB header:transferase Chain: A: PDB Molecule:ll-diaminopimelate aminotransferase; PDBTitle: crystal structure of apo-ll-diaminopimelate aminotransferase from2 chlamydia trachomatis Resolution 2.05 Å

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		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.		.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.					.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure																		.																															.	.	.	.
Query SS confidence																		.																															.	.	.	.
Query Sequence		I	L	G	L	A	D	L	F	R	A	D	E	R	P	G	K	.	I	N	L	G	I	G	V	Y	K	D	E	T	G	K	T	P	V	L	T	S	V	K	K	A	E	Q	Y	L	L	E	.	.	.	.	N	E	T	T	K	N	Y	L	G	I	D	G	I	P	E	F	G	R	C	T	Q	E	L	L	F	G	K	G	S
Query Conservation																		.																															.	.	.	.
Alig confidence																		.							.	.	.	.	.																				.	.	.	.																													.
Template Conservation																									.	.	.	.	.																																																				.
Template Sequence		L	Q	K	R	V	A	Q	F	R	L	E	N	P	Q	H	T	V	I	N	L	S	I	G	.	.	.	.	.	D	T	T	Q	P	L	N	A	S	V	A	E	A	F	A	S	S	I	A	R	L	S	S	P	T	T	C	R	G	Y	G	P	D	F	G	L	P	A	L	R	Q	K	L	S	E	D	F	Y	R	G	F	.
Template Known Secondary structure														T	T	S						S	S		.	.	.	.	.																						T	S	S	S								T	T												T	T	S	T	T	S	.
Template Predicted Secondary structure																									.	.	.	.	.																																																				.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.						.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.		.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure																																																											.
Query SS confidence																																																											.
Query Sequence		A	L	I	N	D	K	R	A	R	T	A	Q	T	P	G	G	T	G	A	L	R	V	A	A	D	F	L	A	K	N	T	S	V	K	R	V	W	V	S	N	P	S	W	P	N	H	K	S	V	F	N	S	A	G	L	E	V	.	R	E	Y	A	Y	Y	D	A	E	N	H	T	L	D	F	D	A	L	I	N	S	L
Query Conservation																																																											.
Alig confidence		.	.							.	.																		.	.	.																												.																		.	.	.	.	.
Template Conservation		.	.							.	.																		.	.	.																																														.	.	.	.	.
Template Sequence		.	.	V	D	A	K	E	I	.	.	F	I	S	D	G	A	K	V	D	L	F	R	L	L	S	F	F	.	.	.	G	P	N	Q	T	V	A	I	Q	D	P	S	Y	P	A	Y	L	D	I	A	R	L	T	G	A	K	E	I	I	A	L	P	C	L	Q	E	N	A	F	F	P	E	F	P	E	.	.	.	.	.
Template Known Secondary structure		.	.	S		G	G	G		.	.				S														.	.	.		S	S								S												T	T		S									G	G	G	T	T						T	.	.	.	.	.
Template Predicted Secondary structure		.	.							.	.																		.	.	.																																														.	.	.	.	.
Template SS confidence
				93	.	.	.	.	.			.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.				.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	E	A	Q	A	G	D	V	V	L	F	H	G	C	C	H	N	P	T	G	I	D	P	T	L	E	Q	W	Q	T	L	A	Q	L	S	V	E	K	G	W	L	P	L	F	D	F	A	Y	Q	G	F	A	R	G	L	E	E	D	A	E	G	L	R	A	F	A	A	M	H	K	E	L	I	V	A	S	S	Y	S	K
Query Conservation
Alig confidence		.	.	.																																																								.
Template Conservation		.	.	.																																																								.
Template Sequence		.	.	.	D	T	H	I	D	I	L	C	L	C	S	P	N	N	P	T	G	T	V	L	N	K	D	Q	L	R	A	I	V	H	Y	A	I	E	H	E	I	L	I	L	F	D	A	A	Y	S	T	F	I	S	D	P	S	L	P	.	K	S	I	F	E	I	P	D	A	R	F	C	A	I	E	I	N	S	F	S	K
Template Known Secondary structure		.	.	.	T				S						S	S		T	T	T																			T	T								T	T	G	G	G				T	T	S		.	S	S	G	G	G	S	T	T	G	G	G	T									G
Template Predicted Secondary structure		.	.	.																																																								.
Template SS confidence
					161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.		.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270		.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure																										.
Query SS confidence																										.
Query Sequence		N	F	G	L	Y	N	E	R	V	G	A	C	T	L	V	A	A	D	S	E	T	V	D	R	.	A	F	S	Q	M	K	A	A	I	R	A	N	Y	S	N	P	P	A	H	G	A	S	V	V	A	T	I	L	S	N	D	A	L	R	A	I	W	E	Q	E	L	T	D	M	R	Q	R	I	Q	R	M	R	Q	L	F
Query Conservation																										.
Alig confidence																										.																														.	.	.	.	.	.	.	.
Template Conservation																																																								.	.	.	.	.	.	.	.
Template Sequence		P	L	G	F	A	G	I	R	L	G	W	T	V	I	P	Q	E	L	T	Y	A	D	G	H	F	V	I	Q	D	W	E	R	F	L	S	T	T	F	N	G	A	S	I	P	A	Q	E	A	G	V	A	G	L	S	.	.	.	.	.	.	.	.	I	L	P	Q	L	E	A	I	H	Y	Y	R	E	N	S	D	L	L
Template Known Secondary structure		G	G	T	T	T	T										T	T		B		T	T	S		B																														.	.	.	.	.	.	.	.		T	T	T
Template Predicted Secondary structure																																																								.	.	.	.	.	.	.	.
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290									.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.							.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.											.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.
Query Sequence		V	N	T	L	Q	E	K	G	A	N	R	D	F	S	F	I	I	K	Q	N	G	M	F	S	F	S	G	L	.	.	.	.	.	.	T	K	E	Q	V	L	R	L	R	E	E	F	G	V	Y	A	V	A	S	G	.	.	.	.	.	.	.	.	.	.	R	V	N	V	A	G	M	T	P	D	N	M	A	P	L	C
Query Conservation																														.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.																	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.						.
Template Conservation										.	.	.	.																																																										.
Template Sequence		R	K	A	L	L	A	T	G	.	.	.	.	F	E	V	F	G	G	E	H	A	P	Y	L	W	V	K	P	T	Q	A	N	I	S	D	R	D	L	F	D	F	F	L	R	E	Y	H	I	A	I	T	P	G	I	G	F	G	R	S	G	S	G	F	V	R	F	S	S	L	.	G	K	R	E	D	I	L	A	A	C
Template Known Secondary structure								T	T	.	.	.	.							S	S	S	S									T	T			T	T	T										S						G	G	G	G		G	G	G	T	T								.	S
Template Predicted Secondary structure										.	.	.	.																																																										.
Template SS confidence
		309	310	.	.	.	.	.	.					.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.		.	.	.	.	.	.	380	.	.	.
		390	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	I	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	R	L	Q
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		384	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions