Job Description P00509 Confidence 99.82% Date Thu Jan 5 10:56:40 GMT 2012 Rank 196 Aligned Residues 345 % Identity 14% Template c3a8uX_ PDB info PDB header:transferase Chain: X: PDB Molecule:omega-amino acid--pyruvate aminotransferase; PDBTitle: crystal structure of omega-amino acid:pyruvate aminotransferase Resolution 1.40 Å

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.		.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure																																														.
Query SS confidence																																														.
Query Sequence		I	N	L	G	I	G	V	Y	K	D	E	T	G	K	T	P	V	L	T	S	V	K	K	A	E	Q	Y	L	L	E	N	E	T	T	K	N	Y	L	G	I	D	G	I	P	.	E	F	G	R	C	T	Q	E	L	L	F	G	K	G	S	A	L	I	N	D	K	R	A	R	T	A	Q	T	P	G	G	T	G	A	L
Query Conservation																																														.
Alig confidence																		.	.															.	.	.										.																				.	.	.	.
Template Conservation																		.	.															.	.	.																														.	.	.	.
Template Sequence		Y	D	S	L	S	G	L	W	T	C	G	A	G	H	T	R	.	.	K	E	I	Q	E	A	V	A	K	Q	L	S	T	L	.	.	.	D	Y	S	P	G	F	Q	Y	G	H	P	L	S	F	Q	L	A	E	K	I	T	D	L	T	P	G	N	L	N	.	.	.	.	H	V	F	F	T	D	S	G	S	E	C	A
Template Known Secondary structure				T	T					T		T	T		B	S		.	.											T	T	T		.	.	.	S				S	S	S															T	T	S	S	T	T			.	.	.	.						S	S
Template Predicted Secondary structure																		.	.															.	.	.																														.	.	.	.
Template SS confidence
		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.			.	70	.	.	.	.	.	.	.	.	.	80	.	.				.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.					.	.	.	.	.	.	.	.	120	.	.	.
		108	.	110	.	.	.	.	.	.	.							.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.														.	.	.	.	.	.	.	.												150	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	V	A	A	D	F	L	A	K	N	.	.	.	.	.	.	T	S	V	K	R	V	W	V	S	N	P	S	W	P	N	H	K	S	V	F	N	S	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	L	E	V	R	E	Y	A	Y	.	.	.	.	.	.	.	.	.	.	.	Y	D	A	E	N	H	T	L
Query Conservation												.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	T	A	V	K	M	V	R	A	Y	W	R	L	K	G	Q	A	T	K	T	K	M	I	G	R	A	R	G	Y	H	G	V	N	I	A	G	T	S	L	G	G	V	N	G	N	R	K	L	F	G	Q	P	M	Q	D	V	D	H	L	P	H	T	L	L	A	S	N	A	Y	S	R	G	M	P	K	E	G	G	I	A
Template Known Secondary structure															T	T		T	T								T	T					S	S														T	T	T				S		S										G	G	G	T	T		S	S	S		S	S	S
Template Predicted Secondary structure
Template SS confidence
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.			.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure																															.	.
Query SS confidence																															.	.
Query Sequence		D	F	D	A	L	I	N	S	L	N	E	A	Q	A	G	D	V	V	L	F	H	G	C	C	H	N	P	T	G	.	.	I	D	P	T	L	E	Q	W	Q	T	L	A	Q	L	S	V	E	K	G	W	L	P	L	F	D	F	A	Y	Q	G	F	A	R	G	L	E	E	D	A	E	G	L	R	A	F	A	A	M	H
Query Conservation																															.	.
Alig confidence																															.	.																																					.	.
Template Conservation																																																																					.	.
Template Sequence		L	A	D	E	L	L	K	L	I	E	L	H	D	A	S	N	I	A	A	V	F	V	E	P	L	A	G	S	A	G	V	L	V	P	P	E	G	Y	L	K	R	N	R	E	I	C	N	Q	H	N	I	L	L	V	F	D	E	V	I	T	G	F	G	R	T	G	S	.	.	M	F	G	A	D	S	F	G	V	T	P
Template Known Secondary structure															G	G	G								S	S	B	T	T	T	T		B				T	T													T								T	T	T	T	T	T	T	T	S	S	.	.	S	S						T
Template Predicted Secondary structure																																																																					.	.
Template SS confidence
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270			.	.	.	.	.	.	.	.	.	280	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.			.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure																																						.	.
Query SS confidence																																						.	.
Query Sequence		K	E	L	I	V	A	S	S	Y	S	K	N	F	G	L	Y	N	E	R	V	G	A	C	T	L	V	A	A	D	S	E	T	V	D	R	A	.	.	F	S	Q	M	K	A	A	I	R	A	N	Y	S	N	P	P	A	H	G	A	S	V	V	A	T	I	L	S	N	D	A	L	R	A	I	W	E	Q	E	L	T	D
Query Conservation																																						.	.
Alig confidence			.	.	.	.																																.	.																													.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.																																																														.	.	.	.	.	.	.	.
Template Sequence		D	.	.	.	.	L	M	C	I	A	K	Q	V	T	N	G	A	I	P	M	G	A	V	I	A	S	T	E	I	Y	Q	T	F	M	N	Q	P	T	P	E	Y	A	V	E	F	P	H	G	Y	T	Y	S	A	H	P	V	A	C	A	A	G	L	A	A	L	C	.	.	.	.	.	.	.	.	L	L	Q	K	E	N
Template Known Secondary structure		S	.	.	.	.						G	G	G	G	T	T	S	S																	T		S	S		T	T	S		S	S					T	T	T	T														.	.	.	.	.	.	.	.					T	T
Template Predicted Secondary structure			.	.	.	.																																																														.	.	.	.	.	.	.	.
Template SS confidence
		282					.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.									.	.	.	.	.	.
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.									.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.				.	.	.	.	.		.	380	.
Predicted Secondary structure																																												.	.	.	.	.	.	.	.																			.	.	.						.
Query SS confidence																																												.	.	.	.	.	.	.	.																			.	.	.						.
Query Sequence		M	R	Q	R	I	Q	R	M	R	Q	L	F	V	N	T	L	Q	E	K	G	A	N	R	D	F	S	F	I	I	K	Q	N	G	M	F	S	F	S	G	L	T	K	.	.	.	.	.	.	.	.	E	Q	V	L	R	L	R	E	E	F	G	V	Y	A	V	A	S	G	.	.	.	R	V	N	V	A	.	G	M	T
Query Conservation																																												.	.	.	.	.	.	.	.																			.	.	.						.
Alig confidence																																												.	.	.	.	.	.	.	.																			.	.	.						.
Template Conservation
Template Sequence		L	V	Q	S	V	A	E	V	A	P	H	F	E	K	A	L	H	G	I	K	G	A	K	N	V	I	D	I	R	N	F	G	L	A	G	A	I	Q	I	A	P	R	D	G	D	A	I	V	R	P	F	E	A	G	M	A	L	W	K	A	G	F	Y	V	R	F	G	G	D	T	L	Q	F	G	P	T	F	N	S	K
Template Known Secondary structure																			T	T	T	T	S	T	T								T	T									B	T	T	B	S	S														T							T	T								T	T
Template Predicted Secondary structure
Template SS confidence
		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.
		382	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	D	N	M	A	P	L	C	E	A	I	V	A	V	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	Q	D	L	D	R	L	F	D	A	V	G	E	V	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		430	.	.	.	.	.	.	.	.	.	440	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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