Job Description P00509 Confidence 99.96% Date Thu Jan 5 10:56:40 GMT 2012 Rank 93 Aligned Residues 336 % Identity 13% Template c2z9wA_ PDB info PDB header:transferase Chain: A: PDB Molecule:aspartate aminotransferase; PDBTitle: crystal structure of pyridoxamine-pyruvate aminotransferase complexed2 with pyridoxal Resolution 1.70 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	E	R	P	G	K	I	N	L	G	I	G	V	Y	K	D	E	T	G	K	T	P	V	L	T	S	V	K	K	A	E	Q	Y	L	L	E	N	E	T	T	K	N	Y	L	G	I	D	G	I	P	E	F	G	R	C	T	Q	E	L	L	F	G	K	G	S	A	L	I	N	D	K	R	A	R	T	A	Q	T	P	G
Query Conservation
Alig confidence														.	.	.	.	.	.	.													.	.	.	.											.	.																								.	.	.	.
Template Conservation														.	.	.	.	.	.	.													.	.	.	.											.	.																								.	.	.	.
Template Sequence		E	H	A	D	P	V	I	T	L	T	A	G	.	.	.	.	.	.	.	P	V	N	A	Y	P	E	V	L	R	G	L	.	.	.	.	G	R	T	V	L	Y	D	Y	D	P	.	.	A	F	Q	L	L	Y	E	K	V	V	D	K	A	Q	K	A	M	R	L	S	N	K	P	.	.	.	.	V	I	L	H	G	E
Template Known Secondary structure		T	T	S			S					S	S	.	.	.	.	.	.	.	S											T	.	.	.	.	T	S					T	T	S		.	.																	T	T		S	S			.	.	.	.				S	S
Template Predicted Secondary structure														.	.	.	.	.	.	.													.	.	.	.											.	.																								.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.								.	.	20	.	.	.	.	.	.	.	.	.					30	.	.	.	.	.	.	.	.	.			40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.					.	.	.	.	.	.
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	T	G	A	L	R	V	A	A	D	F	L	A	K	N	T	S	V	K	R	V	W	V	S	N	P	S	W	P	N	H	K	S	V	F	N	S	A	G	L	E	V	R	E	Y	A	Y	Y	D	A	E	N	H	T	L	D	F	D	A	L	I	N	S	L	N	E	A	Q	A	G	D	V	V	L	F	H	G	C	C	H
Query Conservation
Alig confidence														.	.																																																					.
Template Conservation														.	.																																																					.
Template Sequence		P	V	L	G	L	E	A	A	A	A	S	L	.	.	I	S	P	D	D	V	V	L	N	L	A	S	G	V	Y	G	K	G	F	G	Y	W	A	K	R	Y	S	P	H	L	L	E	I	E	V	P	Y	N	E	A	I	D	P	Q	A	V	A	D	M	L	K	A	.	H	P	E	I	T	V	V	S	V	C	H	H	D
Template Known Secondary structure		T												.	.			T	T								S	S															S									T	T	S														.		T	T								S
Template Predicted Secondary structure														.	.																																																					.
Template SS confidence
		69	70	.	.	.	.	.	.	.	.	.	80			.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.		.	.	.	.	.	.	.	140	.	.	.	.	.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	P	T	G	I	D	P	T	L	E	Q	W	Q	T	L	A	Q	L	S	V	E	K	G	W	L	P	L	F	D	F	A	Y	Q	G	F	A	R	G	L	E	E	D	A	E	G	L	R	A	F	A	A	M	H	K	E	L	I	V	A	S	S	Y	S	K	N	F	G	L	Y	N	E	R	V	G	A	C	T	L	V	A
Query Conservation
Alig confidence										.	.	.																														.	.	.	.	.	.	.	.	.																			.
Template Conservation										.	.	.																														.	.	.	.	.	.	.	.	.																			.
Template Sequence		T	P	S	G	T	I	N	P	.	.	.	I	D	A	I	G	A	L	V	S	A	H	G	A	Y	L	I	V	D	A	V	S	S	F	G	G	M	K	T	H	.	.	.	.	.	.	.	.	.	P	E	D	C	K	A	D	I	Y	V	T	G	P	N	K	C	L	G	.	A	P	P	G	L	T	M	M	G	V	S	E
Template Known Secondary structure		G	G	G	T					.	.	.											T	T								T	T	T	B	T	T	B	S			.	.	.	.	.	.	.	.	.	G	G	G	T	T		S						S	S	S	T	T		.			S
Template Predicted Secondary structure										.	.	.																														.	.	.	.	.	.	.	.	.																			.
Template SS confidence
		146	.	.	.	150	.	.	.				.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.										.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200		.	.	.	.	.	.	.	.	.	210	.	.
		263	.	.	.	.	.	.														270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	D	S	E	T	V	D	.	.	.	.	.	.	.	.	.	.	.	.	.	R	A	F	S	Q	M	K	A	A	I	R	A	N	Y	S	N	P	P	A	H	G	A	S	V	V	A	T	I	L	S	N	D	A	L	R	A	I	W	E	Q	E	L	T	D	M	R	Q	R	I	Q	R	M	R	Q	L	F	V	N	T	L
Query Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.
Template Conservation																																																							.	.	.	.	.
Template Sequence		R	A	W	A	K	M	K	A	N	P	L	A	P	R	A	S	M	L	S	I	V	D	W	E	N	A	W	S	R	D	K	P	F	P	F	T	P	S	V	S	E	I	N	G	L	D	V	A	L	D	L	Y	L	.	.	.	.	.	N	E	G	P	E	A	V	W	A	R	H	A	L	T	A	K	A	M	R	A	G	V
Template Known Secondary structure									T		T	T	S			S	S	T	T		S	G	G	G	T	T	T	T	S	T	T	S			S	S																			.	.	.	.	.
Template Predicted Secondary structure																																																							.	.	.	.	.
Template SS confidence
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.						.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.						.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.									.	.	.	.			.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.																			.	.	.	.	.	.	.	.					.	.
Query SS confidence																												.	.	.	.	.																			.	.	.	.	.	.	.	.					.	.
Query Sequence		Q	E	K	G	A	N	R	D	F	S	F	I	I	K	Q	N	G	M	F	S	F	S	G	L	T	K	.	.	.	.	.	E	Q	V	L	R	L	R	E	E	F	G	V	Y	A	V	A	S	G	.	.	.	.	.	.	.	.	R	V	N	V	.	.	A	G	M	T	P	D	N	M	A	P	L	C	E	A	I	V	A
Query Conservation																												.	.	.	.	.																			.	.	.	.	.	.	.	.					.	.
Alig confidence																												.	.	.	.	.																			.	.	.	.	.	.	.	.					.	.
Template Conservation
Template Sequence		T	A	M	G	L	S	V	W	A	A	S	D	S	I	A	S	P	T	T	T	A	V	R	T	P	D	G	V	D	E	K	A	L	R	Q	A	A	R	A	R	Y	G	V	V	F	S	S	G	R	G	E	T	L	G	K	L	T	R	I	G	H	M	G	P	T	A	Q	P	I	Y	A	I	A	A	L	T	A	L	G	G
Template Known Secondary structure					T			B	S	S	S	S	G	G	G	B		S	S								T	T																			B				G	G	G	T	T	T								G	G	G		S
Template Predicted Secondary structure
Template SS confidence
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
		395	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	M
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		368	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions