Job Description P00509 Confidence 100.00% Date Thu Jan 5 10:56:40 GMT 2012 Rank 64 Aligned Residues 349 % Identity 18% Template c2z61A_ PDB info PDB header:transferase Chain: A: PDB Molecule:probable aspartate aminotransferase 2; PDBTitle: crystal structure of mj0684 from methanococcus jannaschii2 reveals its similarity in the active site to kynurenine3 aminotransferases Resolution 2.20 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.			.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																						.	.
Query SS confidence																						.	.
Query Sequence		E	N	I	T	A	A	P	A	D	P	I	L	G	L	A	D	L	F	R	A	.	.	D	E	R	P	G	K	I	N	L	G	I	G	V	Y	K	D	E	T	G	K	T	P	V	L	T	S	V	K	K	A	E	Q	Y	L	L	E	N	E	T	T	K	N	Y	L	G	I	D	G	I	P	E	F	G	R	C	T	Q	E
Query Conservation																						.	.
Alig confidence																						.	.													.	.	.	.	.																						.
Template Conservation																																				.	.	.	.	.																						.
Template Sequence		K	R	L	L	N	F	E	S	F	E	V	M	D	I	L	A	L	A	Q	K	L	E	S	E	G	K	K	V	I	H	L	E	I	G	.	.	.	.	.	E	P	D	F	N	T	P	K	P	I	V	D	E	G	I	K	S	L	K	E	G	.	K	T	H	Y	T	D	S	R	G	I	L	E	L	R	E	K	I	S	E
Template Known Secondary structure											T	T													T	T										.	.	.	.	.	S		S	S																T	T	.			S				T	T
Template Predicted Secondary structure																																				.	.	.	.	.																						.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.						.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.		.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	F	G	K	G	S	A	L	I	N	D	K	R	A	R	T	A	Q	T	P	G	G	T	G	A	L	R	V	A	A	D	F	L	A	K	N	T	S	V	K	R	V	W	V	S	N	P	S	W	P	N	H	K	S	V	F	N	S	A	G	L	E	V	R	E	Y	A	Y	Y	D	A	E	N	H	T	L	D	F	D
Query Conservation
Alig confidence																	.	.																		.	.																																					.	.	.	.	.	.	.	.
Template Conservation																	.	.																		.	.																																					.	.	.	.	.	.	.	.
Template Sequence		L	Y	K	D	K	Y	K	A	D	I	I	P	D	N	I	.	.	I	I	T	G	G	S	S	L	G	L	F	F	A	L	S	S	I	.	.	I	D	D	G	D	E	V	L	I	Q	N	P	C	Y	P	C	Y	K	N	F	I	R	F	L	G	A	K	P	V	F	C	D	F	T	V	E	.	.	.	.	.	.	.	.
Template Known Secondary structure							S	S					G	G	G		.	.				S	S													.	.			T	T							S	S			T									T	T								S	S			.	.	.	.	.	.	.	.
Template Predicted Secondary structure																	.	.																		.	.																																					.	.	.	.	.	.	.	.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.			.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.			110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	I	N	S	L	N	E	A	Q	A	G	D	V	V	L	F	H	G	C	C	H	N	P	T	G	I	D	P	T	L	E	Q	W	Q	T	L	A	Q	L	S	V	E	K	G	W	L	P	L	F	D	F	A	Y	Q	G	F	A	R	G	L	E	E	D	A	E	G	L	R	A	F	A	A	M	H	K	E	L	I	V
Query Conservation
Alig confidence		.	.	.																												.	.	.	.																													.	.
Template Conservation		.	.	.																												.	.	.	.																													.	.
Template Sequence		.	.	.	S	L	E	E	A	L	S	D	K	T	K	A	I	I	I	N	S	P	S	N	P	L	G	E	V	I	D	.	.	.	.	R	E	I	Y	E	F	A	Y	E	N	I	P	Y	I	I	S	D	E	I	Y	N	G	L	V	Y	E	G	K	.	.	C	Y	S	A	I	E	F	D	E	N	L	E	K	T	I	L
Template Known Secondary structure		.	.	.								S	S								S	S		T	T	T						.	.	.	.												S							T	T	T	T		B	S	S	S		.	.				G	G	G	T		T	T		S	S
Template Predicted Secondary structure		.	.	.																												.	.	.	.																													.	.
Template SS confidence
					146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.					.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200			.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		A	S	S	Y	S	K	N	F	G	L	Y	N	E	R	V	G	A	C	T	L	V	A	A	D	S	E	T	V	D	R	A	F	S	Q	M	K	A	A	I	R	A	N	Y	S	N	P	P	A	H	G	A	S	V	V	A	T	I	L	S	N	D	A	L	R	A	I	W	E	Q	E	L	T	D	M	R	Q	R	I	Q	R
Query Conservation
Alig confidence											.																										.	.	.	.	.	.	.																		.	.	.	.	.
Template Conservation											.																										.	.	.	.	.	.	.																		.	.	.	.	.
Template Sequence		I	N	G	F	S	L	Y	A	M	.	T	G	W	R	I	G	Y	V	I	S	N	D	E	I	I	E	A	I	L	K	L	Q	Q	N	L	.	.	.	.	.	.	.	F	I	S	A	P	T	I	S	Q	Y	A	A	L	K	A	F	E	.	.	.	.	.	K	E	T	E	R	E	I	N	S	M	I	K	E	F	D	R
Template Known Secondary structure											.	G	G	G																							.	.	.	.	.	.	.	T	S	S	S									G	G	G	G	S	.	.	.	.	.
Template Predicted Secondary structure											.																										.	.	.	.	.	.	.																		.	.	.	.	.
Template SS confidence
		217	.	.	220	.	.	.	.	.		.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250								.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.						.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.				.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.											.	.	.	.	.	.	380	.	.	.	.	.	.	.
Predicted Secondary structure																																			.	.	.																					.	.	.	.	.	.	.	.	.	.
Query SS confidence																																			.	.	.																					.	.	.	.	.	.	.	.	.	.
Query Sequence		M	R	Q	L	F	V	N	T	L	Q	E	K	G	A	N	R	D	F	S	F	I	I	K	Q	N	G	M	F	S	F	S	G	L	.	.	.	T	K	E	Q	V	L	R	L	R	E	E	F	G	V	Y	A	V	A	S	G	.	.	.	.	.	.	.	.	.	.	R	V	N	V	A	G	M	T	P	D	N	M	A	P
Query Conservation																																			.	.	.																					.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.																	.	.	.																					.	.	.	.	.	.	.	.	.	.						.
Template Conservation															.	.	.	.																																																							.
Template Sequence		R	R	R	L	V	L	K	Y	V	K	D	F	G	.	.	.	.	W	E	V	N	N	P	I	G	A	Y	Y	V	F	P	N	I	G	E	D	G	R	E	F	A	Y	K	L	L	K	E	K	F	V	A	L	T	P	G	I	G	F	G	S	K	G	K	N	Y	I	R	I	S	Y	A	.	N	S	Y	E	N	I	K	E
Template Known Secondary structure													T	T	.	.	.	.		B						B	T	T					B		S	S																				G	G	G	G		G	G	G	S	S	B							.	S
Template Predicted Secondary structure															.	.	.	.																																																							.
Template SS confidence
		285	.	.	.	.	290	.	.	.	.	.	.	.					.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.		.	.	.	.	.	.	.	.
		388	.	390	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	C	E	A	I	V	A	V	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	L	E	R	I	K	E	F	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		360	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions