Job Description P00509 Confidence 99.67% Date Thu Jan 5 10:56:40 GMT 2012 Rank 229 Aligned Residues 355 % Identity 15% Template c2qmaB_ PDB info PDB header:transferase Chain: B: PDB Molecule:diaminobutyrate-pyruvate transaminase and l-2,4- PDBTitle: crystal structure of glutamate decarboxylase domain of2 diaminobutyrate-pyruvate transaminase and l-2,4-diaminobutyrate3 decarboxylase from vibrio parahaemolyticus Resolution 1.81 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	N	I	T	A	A	P	A	D	P	I	L	G	L	A	D	L	F	R	A	D	E	R	P	G	K	I	N	L	G	I	G	V	Y	K	D	E	T	G	K	T	P	V	L	T	S	V	K	K	A	E	Q	Y	L	L	E	N	E	T	T	K	N	Y	L	G	I	D	G	I	P	E	F	G	R	C	T	Q	E	L	L
Query Conservation
Alig confidence							.
Template Conservation							.
Template Sequence		V	D	L	D	N	.	K	N	A	P	L	K	S	V	I	D	D	V	A	E	L	V	A	K	N	A	I	F	T	Q	H	P	D	C	I	A	H	L	H	T	P	P	L	X	P	A	V	A	A	E	A	X	I	A	A	L	N	Q	S	X	D	S	W	D	Q	A	S	S	A	T	Y	V	E	Q	K	V	V	N	W	L
Template Known Secondary structure				S	S	S	.																T	G	G	G	S			T	T	S	T	T	B		S	S	S																						T	T		G	G	G
Template Predicted Secondary structure							.
Template SS confidence
		532	.	.	.	.		.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.																			.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.
Query SS confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.
Query Sequence		F	G	K	G	S	A	L	I	N	D	K	R	A	R	T	A	Q	T	P	G	G	T	G	A	L	R	V	A	A	D	F	L	A	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	T	S	V	K	R	V	W	V	S	N	P	S	W	P	N	H	K	S	V	F	N	S	A	G	L	.	.
Query Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.
Alig confidence								.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.
Template Conservation								.	.	.
Template Sequence		C	D	K	Y	D	L	.	.	.	S	E	K	A	D	G	I	F	T	S	G	G	T	Q	S	N	Q	X	G	L	X	L	A	R	D	W	I	A	D	K	L	S	G	H	S	I	Q	K	L	G	L	P	D	Y	A	D	K	L	R	I	V	C	S	K	K	S	H	F	T	V	Q	K	S	A	S	W	X	G	L	G	E
Template Known Secondary structure					T	T		.	.	.		T	T							S	S																														S		T	T	G	G	G							T	T	S		T									T	T	S		G
Template Predicted Secondary structure								.	.	.
Template SS confidence
		611	.	.	.	.	.				.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.
			143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170				.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure		.																													.	.	.
Query SS confidence		.																													.	.	.
Query Sequence		.	E	V	R	E	Y	A	Y	Y	D	A	E	N	H	T	L	D	F	D	A	L	I	N	S	L	N	E	A	Q	.	.	.	A	G	D	V	V	L	F	H	G	C	C	H	N	P	T	G	I	D	P	T	L	E	Q	W	Q	T	L	A	Q	L	S	V	E	K	G	W	L	P	L	F	D	F	A	Y	Q	G	F	A
Query Conservation		.																													.	.	.
Alig confidence		.								.	.																				.	.	.																					.	.	.
Template Conservation										.	.																																											.	.	.
Template Sequence		K	A	V	X	T	V	D	A	.	.	N	A	D	G	T	X	D	I	T	K	L	D	E	V	I	A	Q	A	K	A	E	G	L	I	P	F	A	I	V	G	T	A	G	T	T	D	H	G	A	I	D	D	.	.	.	L	D	F	I	A	D	X	A	V	K	H	D	X	W	X	H	V	D	G	A	Y	G	G	A	L
Template Known Secondary structure		G	G						B	.	.		T	T	S		B															T	T										B	S		T	T	T			B			.	.	.												T								T	T	G	G	G	G
Template Predicted Secondary structure										.	.																																											.	.	.
Template SS confidence
		688	.	690	.	.	.	.	.			.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.				.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	G	L	E	E	D	A	E	G	L	R	A	F	A	A	M	H	K	E	L	I	V	A	S	S	Y	S	K	N	F	G	L	Y	N	E	R	V	G	A	C	T	L	V	A	A	D	S	E	T	V	D	R	A	F	S	Q	M	K	A	A	I	R	A	N	Y	S	N	P	P	A	H	G	A	S	V	V	A	T	I	L
Query Conservation
Alig confidence						.													.	.	.												.														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.													.	.	.												.														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	L	S	S	.	H	K	S	R	L	K	G	V	E	R	A	H	.	.	.	S	I	S	V	D	F	H	K	L	F	Y	.	Q	T	I	S	C	G	A	L	L	V	N	D	K	.	.	.	.	.	.	.	.	.	.	.	.	.	S	N	F	K	F	L	L	K	R	F	D	A	L	K	V	F	X	T	X	Q	N	V
Template Known Secondary structure		G	G	S	T	.	T	G	G	G	G	T	T	G	G	G		S	.	.	.						T	T	S	T	T		.			S	S							S		G	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	G	G	G	G					T											T
Template Predicted Secondary structure						.													.	.	.												.														.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		763	.	.	.		.	.	.	770	.	.	.	.	.	.	.	.				.	780	.	.	.	.	.	.	.	.	.		790	.	.	.	.	.	.	.	.	.	800	.	.														.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.		.	.	.	.	.	.	.	.	350										.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
Predicted Secondary structure																																													.										.	.	.	.	.	.	.	.	.
Query SS confidence																																													.										.	.	.	.	.	.	.	.	.
Query Sequence		S	N	D	A	L	R	A	I	W	E	Q	E	L	T	D	M	R	Q	R	I	Q	R	M	R	Q	L	F	V	N	T	L	Q	E	K	G	A	N	R	D	F	S	F	I	.	I	K	Q	N	G	M	F	S	F	.	.	.	.	.	.	.	.	.	S	G	L	T	K	E	Q	V	L	R	L	R	E	E	F	G	V	Y
Query Conservation																																													.										.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.																										.	.	.							.										.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.																										.	.	.
Template Sequence		G	.	.	.	.	.	.	.	.	P	K	A	L	G	D	X	Y	D	H	L	L	A	Q	T	L	E	V	A	D	X	I	R	T	N	.	.	.	D	Q	F	E	L	L	A	E	P	S	L	S	T	V	L	F	R	A	T	H	E	T	A	D	L	D	E	L	N	K	A	L	R	L	E	A	L	T	R	G	I	A	V
Template Known Secondary structure			.	.	.	.	.	.	.	.																								T		.	.	.	T	T					S			S	S	S									S	S	S																	T	S		B
Template Predicted Secondary structure			.	.	.	.	.	.	.	.																										.	.	.
Template SS confidence
		849									850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.				.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.
		369	370	.	.								.	.	.	.	.	.	.			380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
Predicted Secondary structure						.	.	.	.	.	.	.								.	.
Query SS confidence						.	.	.	.	.	.	.								.	.
Query Sequence		A	V	A	S	.	.	.	.	.	.	.	G	R	V	N	V	A	G	.	.	M	T	P	D	N	M	A	P	L	C	E	A	I	V	A	V
Query Conservation						.	.	.	.	.	.	.								.	.
Alig confidence						.	.	.	.	.	.	.								.	.
Template Conservation
Template Sequence		L	G	E	T	I	V	D	G	K	T	A	L	K	F	T	I	L	N	P	C	L	T	T	S	D	F	E	S	L	L	S	K	I	N	X	L
Template Known Secondary structure								T	T											T	T
Template Predicted Secondary structure
Template SS confidence
		918	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.