Phyre 2 alignment of P00509 with c2po3B

Job Description P00509
Confidence 99.95% Date Thu Jan 5 10:56:40 GMT 2012

Rank 94 Aligned Residues 318

% Identity 15% Template c2po3B_

PDB info PDB header:transferase Chain: B: PDB Molecule:4-dehydrase; PDBTitle: crystal structure analysis of desi in the presence of its2 tdp-sugar product

Resolution 2.10 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure
Query SS confidence
Query Sequence	L	G	I	G	V	Y	K	D	E	T	G	K	T	P	V	L	T	S	V	K	K	A	E	Q	Y	L	L	E	N	E	T	T	K	N	Y	L	G	I	D	G	I	P	E	F	G	R	C	T	Q	E	L	L	F	G	K	G	S	A	L	I	N	D	K	R	A	R	T	A	Q	T	P	G	G	T	G	A	L	R	V	A
Query Conservation
Alig confidence					.	.	.	.	.																								.	.																							.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.																								.	.																							.	.	.	.	.	.	.	.	.	.
Template Sequence	L	L	V	G	.	.	.	.	.	R	P	N	R	I	D	R	A	R	L	Y	E	R	L	D	R	A	L	D	S	Q	W	L	.	.	S	N	G	G	P	L	V	R	E	F	E	E	R	V	A	G	L	A	G	V	R	H	.	.	.	.	.	.	.	.	.	.	A	V	A	T	C	N	A	T	A	G	L	Q	L	L
Template Known Secondary structure			T	T	.	.	.	.	.																					T			.	.	S	S	S																T	S	S		.	.	.	.	.	.	.	.	.	.					S
Template Predicted Secondary structure					.	.	.	.	.																								.	.																							.	.	.	.	.	.	.	.	.	.
Template SS confidence
	2021	.	.	.						.	.	.	.	.	2030	.	.	.	.	.	.	.	.	.	2040	.	.	.	.	.	.	.			.	.	2050	.	.	.	.	.	.	.	.	.	2060	.	.	.	.	.	.	.	.	.											2070	.	.	.	.	.	.	.	.	.	2080	.	.	.

	111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
Predicted Secondary structure
Query SS confidence
Query Sequence	A	D	F	L	A	K	N	T	S	V	K	R	V	W	V	S	N	P	S	W	P	N	H	K	S	V	F	N	S	A	G	L	E	V	R	E	Y	A	Y	Y	D	A	E	N	H	T	L	D	F	D	A	L	I	N	S	L	N	E	A	Q	A	G	D	V	V	L	F	H	G	C	C	H	N	P	T	G	I	D	P	T
Query Conservation
Alig confidence					.	.	.																																	.																	.	.	.									.	.	.
Template Conservation					.	.	.																																	.																	.	.	.									.	.	.
Template Sequence	A	H	A	A	.	.	.	G	L	T	G	E	V	I	M	P	S	M	T	F	A	A	T	P	H	A	L	R	W	I	G	L	T	P	V	F	A	D	I	.	D	P	D	T	G	N	L	D	P	D	Q	V	A	A	A	V	.	.	.	T	P	R	T	S	A	V	V	.	.	.	G	V	H	L	W	G	R	P	C	A
Template Known Secondary structure					.	.	.	T			S						S	S	S		T									T	T								B	.		T	T	T	S	S	B		S	T	T						.	.	.		T	T						.	.	.				G	G	G
Template Predicted Secondary structure					.	.	.																																	.																	.	.	.									.	.	.
Template SS confidence
	2084	.	.	.				.	.	2090	.	.	.	.	.	.	.	.	.	2100	.	.	.	.	.	.	.	.	.	2110	.	.	.	.	.	.	.	.	.		2120	.	.	.	.	.	.	.	.	.	2130	.	.	.	.	.				.	.	.	.	2140	.	.	.				.	.	.	.	.	.	2150	.	.	.

	191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure
Query SS confidence
Query Sequence	L	E	Q	W	Q	T	L	A	Q	L	S	V	E	K	G	W	L	P	L	F	D	F	A	Y	Q	G	F	A	R	G	L	E	E	D	A	E	G	L	R	A	F	A	A	M	H	K	E	L	I	V	A	S	S	Y	S	K	N	F	G	L	Y	N	E	R	V	G	A	C	T	L	V	A	A	D	S	E	T	V	D	R
Query Conservation
Alig confidence	.	.	.																																						.	.	.	.	.	.	.	.
Template Conservation	.	.	.																																						.	.	.	.	.	.	.	.
Template Sequence	.	.	.	A	D	Q	L	R	K	V	A	D	E	H	G	L	R	L	Y	F	D	A	A	H	A	L	G	C	A	V	D	G	R	P	A	G	S	L	G	D	.	.	.	.	.	.	.	.	A	E	V	F	S	F	H	A	T	K	A	V	N	A	F	E	G	G	A	V	V	T	D	D	A	D	L	A	A	R	I	R
Template Known Secondary structure	.	.	.												T								T	T		T	T				T	T			T	T	S	S	S	S	.	.	.	.	.	.	.	.	S							T	T	S	S	S			S	S							S
Template Predicted Secondary structure	.	.	.																																						.	.	.	.	.	.	.	.
Template SS confidence
				2154	.	.	.	.	.	2160	.	.	.	.	.	.	.	.	.	2170	.	.	.	.	.	.	.	.	.	2180	.	.	.	.	.	.	.	.	.	2190									.	.	.	.	.	.	.	.	.	2200	.	.	.	.	.	.	.	.	.	2210	.	.	.	.	.	.	.	.	.	2220	.	.

	271	.	.	.	.	.							.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.
Query Sequence	A	F	S	Q	M	K	.	.	.	.	.	.	A	A	I	R	A	N	Y	S	N	P	P	A	H	G	A	S	V	V	A	T	I	L	S	N	D	A	L	R	A	I	W	E	Q	E	L	T	D	M	R	Q	R	I	Q	R	M	R	Q	L	F	V	N	T	L	Q	E	K	G	A	N	R	D	F	S	F	I	I	K	Q
Query Conservation							.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.
Template Sequence	A	L	H	N	F	G	F	D	L	P	G	G	S	P	A	G	G	T	N	A	K	M	S	E	A	A	A	A	M	G	L	T	S	L	.	.	.	.	.	.	.	.	.	.	D	A	F	P	E	V	I	D	R	N	R	R	N	H	A	A	Y	R	E	H	L	A	D	L	P	G	V	L	V	A	D	H	D	R	H	G
Template Known Secondary structure			T	B	T	T	T	T		T	T			T	T				B		B														.	.	.	.	.	.	.	.	.	.																					T		S		T	T						G	G	G	G	S
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.
Template SS confidence
	2223	.	.	.	.	.	.	2230	.	.	.	.	.	.	.	.	.	2240	.	.	.	.	.	.	.	.	.	2250	.	.	.	.	.	.											.	.	.	2260	.	.	.	.	.	.	.	.	.	2270	.	.	.	.	.	.	.	.	.	2280	.	.	.	.	.	.	.	.	.	2290	.	.

	345	.	.	.	.	350	.										.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.																														.	.	.	.	.		.	.	380	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.
Query SS confidence								.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.
Query Sequence	N	G	M	F	S	F	S	.	.	.	.	.	.	.	.	.	G	L	T	K	E	Q	V	L	R	L	R	E	E	F	G	V	Y	A	V	A	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	R	V	N	V	.	A	G	M	T	P	D	N	M
Query Conservation								.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.
Alig confidence								.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.
Template Conservation
Template Sequence	L	N	N	H	Q	Y	V	I	V	E	I	D	E	A	T	T	G	I	H	R	D	L	V	M	E	V	L	K	A	E	G	V	H	T	R	A	Y	F	S	P	G	C	H	E	L	E	P	Y	R	G	Q	P	H	A	P	L	P	H	T	E	R	L	A	A	R	V	L	S	L	P	T	G	T	A	I	G	D	D	D	I
Template Known Secondary structure	B																S	S												T	T				B		T	T		S		G	G	G	S	T	T	T	T	T	S													T	T							S	T	T
Template Predicted Secondary structure
Template SS confidence
	2293	.	.	.	.	.	.	2300	.	.	.	.	.	.	.	.	.	2310	.	.	.	.	.	.	.	.	.	2320	.	.	.	.	.	.	.	.	.	2330	.	.	.	.	.	.	.	.	.	2340	.	.	.	.	.	.	.	.	.	2350	.	.	.	.	.	.	.	.	.	2360	.	.	.	.	.	.	.	.	.	2370	.	.

	386	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	P	L	C	E	A	I	V	A	V	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence	R	R	V	A	D	L	L	R	L	C	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
	2373	.	.	.	.	.	.	2380	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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