Job Description P00509 Confidence 99.94% Date Thu Jan 5 10:56:40 GMT 2012 Rank 113 Aligned Residues 343 % Identity 14% Template c2huuA_ PDB info PDB header:transferase Chain: A: PDB Molecule:alanine glyoxylate aminotransferase; PDBTitle: crystal structure of aedes aegypti alanine glyoxylate2 aminotransferase in complex with alanine Resolution 2.10 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	P	A	D	P	I	L	G	L	A	D	L	F	R	A	D	E	R	P	G	K	I	N	L	G	I	G	V	Y	K	D	E	T	G	K	T	P	V	L	T	S	V	K	K	A	E	Q	Y	L	L	E	N	E	T	T	K	N	Y	L	G	I	D	G	I	P	E	F	G	R	C	T	Q	E	L	L	F	G	K	G	S
Query Conservation
Alig confidence								.	.	.	.	.	.																.	.	.	.	.	.	.																										.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.																.	.	.	.	.	.	.																										.	.	.	.	.	.
Template Sequence		T	P	P	A	V	L	.	.	.	.	.	.	R	E	P	L	V	T	P	N	K	L	L	M	G	P	G	.	.	.	.	.	.	.	P	S	N	A	P	Q	R	V	L	D	A	M	S	R	P	I	L	G	H	L	H	P	E	T	L	.	.	.	.	.	.	K	I	M	D	D	I	K	E	G	V	R	Y	L	F	Q
Template Known Secondary structure					G	G	G	.	.	.	.	.	.	G	S											S	S	S	.	.	.	.	.	.	.												T	T	S					T	T	S					.	.	.	.	.	.															T
Template Predicted Secondary structure								.	.	.	.	.	.																.	.	.	.	.	.	.																										.	.	.	.	.	.
Template SS confidence
		6	.	.	.	10	.							.	.	.	.	.	.	.	.	20	.	.	.	.	.	.								.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.							.	.	.	.	.	.	.	.	60	.	.	.	.	.	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	I	N	D	K	R	A	R	T	A	Q	T	P	G	G	T	G	A	L	R	V	A	A	D	F	L	A	K	N	T	S	V	K	R	V	W	V	S	N	P	S	W	P	N	H	K	S	V	F	N	S	A	G	L	E	V	R	E	Y	A	Y	Y	D	A	E	N	H	T	L	D	F	D	A	L	I	N	S	L	N
Query Conservation
Alig confidence				.	.	.																							.	.
Template Conservation				.	.	.																							.	.
Template Sequence		T	N	.	.	.	N	I	A	T	F	C	L	S	A	S	G	H	G	G	M	E	A	T	L	C	N	L	.	.	L	E	D	G	D	V	I	L	I	G	H	T	G	H	W	G	D	R	S	A	D	M	A	T	R	Y	G	A	D	V	R	V	V	K	S	K	V	G	Q	S	L	S	L	D	E	I	R	D	A	L	L
Template Known Secondary structure				.	.	.		S						S	S														.	.			T	T								S	S													T	T										T	T
Template Predicted Secondary structure				.	.	.																							.	.
Template SS confidence
		67	.				.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90			.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	Q	A	G	D	V	V	L	F	H	G	C	C	H	N	P	T	G	I	D	P	T	L	E	Q	W	Q	T	L	A	Q	L	S	V	E	K	G	W	L	P	L	F	D	F	A	Y	Q	G	F	A	R	G	L	E	E	D	A	E	G	L	R	A	F	A	A	M	H	K	E	L	I	V	A	S	S	Y	S	K	N
Query Conservation
Alig confidence							.	.																	.	.	.																											.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.																	.	.	.																											.	.	.	.	.	.	.	.	.	.
Template Sequence		I	H	K	P	S	.	.	V	L	F	L	T	Q	G	D	S	S	T	G	V	L	Q	G	.	.	.	L	E	G	V	G	A	L	C	H	Q	H	N	C	L	L	I	V	D	T	V	A	S	L	G	G	A	.	.	.	.	.	.	.	.	.	.	P	M	F	M	D	R	W	E	I	D	A	M	Y	T	G	S	Q	V
Template Known Secondary structure						S	.	.						S			T	T	T	T					.	.	.		T	T								T	T								T	T	T	B	T	T	B	.	.	.	.	.	.	.	.	.	.				T	T	T	T	T		S
Template Predicted Secondary structure							.	.																	.	.	.																											.	.	.	.	.	.	.	.	.	.
Template SS confidence
		142	.	.	.	.			.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.				.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.											.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.																	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	G	L	Y	N	E	R	V	G	A	C	T	L	V	A	A	D	S	E	T	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	R	A	F	S	Q	M	K	A	A	I	R	A	N	Y	S	N	P	P	A	H	G	A	S	V	V	A	T	I	L	S	N	D	A	L	R	A	I	W	E	Q	E	L
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.
Template Conservation				.																																																																					.	.	.	.	.
Template Sequence		L	G	.	A	P	P	G	I	T	P	V	S	F	S	H	R	A	V	E	R	Y	K	R	R	N	T	K	V	K	V	Y	Y	W	D	M	S	L	V	G	D	Y	W	G	C	F	G	R	P	R	I	Y	H	H	T	I	S	S	T	L	L	Y	G	L	R	E	A	I	A	M	A	C	.	.	.	.	.	E	E	G	L
Template Known Secondary structure				.			S	S																T		S	S			S		G	G	G									T	T		S	S	S					S																				.	.	.	.	.
Template Predicted Secondary structure				.																																																																					.	.	.	.	.
Template SS confidence
		208	.		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.						.	.	280	.
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.						.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.									.	.	.	.
Predicted Secondary structure																																														.	.	.	.	.																			.	.	.	.	.	.	.	.					.
Query SS confidence																																														.	.	.	.	.																			.	.	.	.	.	.	.	.					.
Query Sequence		T	D	M	R	Q	R	I	Q	R	M	R	Q	L	F	V	N	T	L	Q	E	K	G	A	N	R	D	F	S	F	I	I	K	Q	N	G	M	F	S	F	S	G	L	T	K	.	.	.	.	.	E	Q	V	L	R	L	R	E	E	F	G	V	Y	A	V	A	S	G	.	.	.	.	.	.	.	.	R	V	N	V	.
Query Conservation																																														.	.	.	.	.																			.	.	.	.	.	.	.	.					.
Alig confidence																								.																						.	.	.	.	.																			.	.	.	.	.	.	.	.					.
Template Conservation																								.
Template Sequence		P	A	L	I	A	R	H	E	D	C	A	K	R	L	Y	R	G	L	Q	D	A	G	.	F	E	L	Y	A	D	P	K	D	R	L	S	T	V	T	T	I	K	V	P	Q	G	V	D	W	L	K	A	A	Q	Y	A	M	K	T	Y	L	V	E	I	S	G	G	L	G	P	T	A	G	Q	V	F	R	I	G	L	M
Template Known Secondary structure																						T	T	.			B	S	S		G	G	G	B		T	T								T	T																			B				G	G	G	T	T	T
Template Predicted Secondary structure																								.
Template SS confidence
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.		.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
			378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	A	G	M	T	P	D	N	M	A	P	L	C	E	A	I	V	A	V	L
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		G	Q	N	A	T	T	E	R	V	D	R	V	L	Q	V	F	Q	E	A	V
Template Known Secondary structure		G	G	G		S
Template Predicted Secondary structure
Template SS confidence
		361	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions