Phyre 2 alignment of P00509 with c2dr1A

Job Description P00509
Confidence 99.92% Date Thu Jan 5 10:56:40 GMT 2012

Rank 138 Aligned Residues 338

% Identity 12% Template c2dr1A_

PDB info PDB header:transferase Chain: A: PDB Molecule:386aa long hypothetical serine aminotransferase; PDBTitle: crystal structure of the ph1308 protein from pyrococcus horikoshii ot3

Resolution 1.90 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	R	P	G	K	I	N	L	G	I	G	V	Y	K	D	E	T	G	K	T	P	V	L	T	S	V	K	K	A	E	Q	Y	L	L	E	N	E	T	T	K	N	Y	L	G	I	D	G	I	P	E	F	G	R	C	T	Q	E	L	L	F	G	K	G	S	A	L	I	N	D	K	R	A	R	T	A	Q	T	P	G	G	T
Query Conservation
Alig confidence											.	.	.	.	.	.	.																									.	.																	.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.																									.	.																	.	.	.	.	.	.	.
Template Sequence	K	P	K	Y	K	L	F	T	A	G	.	.	.	.	.	.	.	P	V	A	C	F	P	E	V	L	E	I	M	K	V	Q	M	F	S	H	R	S	K	E	Y	.	.	R	K	V	H	M	D	T	V	E	R	L	R	E	F	L	E	.	.	.	.	.	.	.	V	E	K	G	E	V	L	L	V	P	S	S	G	T
Template Known Secondary structure	S			S					S	S	.	.	.	.	.	.	.	S											T	T	S					T	T	S				.	.																T	.	.	.	.	.	.	.		S	S	S						S	S
Template Predicted Secondary structure											.	.	.	.	.	.	.																									.	.																	.	.	.	.	.	.	.
Template SS confidence
	18	.	20	.	.	.	.	.	.	.								.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.			.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.								.	.	70	.	.	.	.	.	.	.	.	.	80	.

	105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	G	A	L	R	V	A	A	D	F	L	A	K	N	T	S	V	K	R	V	W	V	S	N	P	S	W	P	N	H	K	S	V	F	N	S	A	G	L	E	V	R	E	Y	A	Y	Y	D	A	E	N	H	T	L	D	F	D	A	L	I	N	S	L	N	E	A	Q	A	G	D	V	V	L	F	H	G	C	C	H	N	P
Query Conservation
Alig confidence											.	.																																																					.
Template Conservation											.	.																																																					.
Template Sequence	G	I	M	E	A	S	I	R	N	G	.	.	V	S	K	G	G	K	V	L	V	T	I	I	G	A	F	G	K	R	Y	K	E	V	V	E	S	N	G	R	K	A	V	V	L	E	Y	E	P	G	K	A	V	K	P	E	D	L	D	D	A	L	R	K	.	N	P	D	V	E	A	V	T	I	T	Y	N	E	T	S
Template Known Secondary structure											.	.	S		T	T								S	S													T	T										T	T															.		T	T								S			T	T
Template Predicted Secondary structure											.	.																																																					.
Template SS confidence
	82	.	.	.	.	.	.	.	90	.			.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.		.	.	.	.	.	.	150	.	.	.	.	.	.	.	.

	185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.										.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.	.	.	.	.
Query Sequence	T	G	I	D	P	T	L	E	Q	W	Q	T	L	A	Q	L	S	V	E	K	G	W	L	P	L	F	D	F	A	Y	Q	G	F	A	R	G	L	E	E	D	A	E	G	L	.	.	.	.	.	.	.	.	.	R	A	F	A	A	M	H	K	E	L	I	V	A	S	S	Y	S	K	N	F	G	L	Y	N	E	R	V
Query Conservation																																													.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.																																				.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.
Template Sequence	T	G	V	L	N	P	.	.	.	L	P	E	L	A	K	V	A	K	E	H	D	K	L	V	F	V	D	A	V	S	A	M	G	G	A	D	I	K	F	D	K	W	G	L	D	V	V	F	S	S	S	Q	K	A	F	G	V	P	P	G	L	A	I	G	A	F	S	E	R	F	L	E	I	A	E	K	M	P	E	R
Template Known Secondary structure	T	T					.	.	.											T	T								T	T	T	B	T	T	B				T	T	T	T	T		S						T	T	S	T	T				S	S															T	T		T	T
Template Predicted Secondary structure							.	.	.
Template SS confidence
	159	160	.	.	.	.				.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.

	256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	G	A	C	T	L	V	A	A	D	S	E	T	V	D	R	A	F	S	Q	M	K	A	A	I	R	A	N	Y	S	N	P	P	A	H	G	A	S	V	V	A	T	I	L	S	N	D	A	L	R	A	I	W	E	Q	E	L	T	D	M	R	Q	R	I	Q	R	M	R	Q	L	F	V	N	T	L	Q	E	K	G	A	N
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.																															.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.																															.	.	.	.
Template Sequence	G	W	Y	F	D	I	.	.	.	.	.	.	.	.	P	L	Y	V	K	Y	L	K	E	K	E	S	T	P	S	T	P	P	M	P	Q	V	F	G	I	N	V	A	L	R	.	.	.	.	I	I	E	K	M	G	G	K	E	K	W	L	E	M	Y	E	K	R	A	K	M	V	R	E	G	V	R	E	I	G	L	D
Template Known Secondary structure		S	T	T			.	.	.	.	.	.	.	.											S	S		S	S																.	.	.	.					T	T																							T	T
Template Predicted Secondary structure							.	.	.	.	.	.	.	.																															.	.	.	.
Template SS confidence
	236	.	.	.	240	.									.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.					.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.

	336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.				.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.									.	.	.	.	.		.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.																							.	.	.	.	.	.	.	.						.
Query SS confidence																	.	.	.																							.	.	.	.	.	.	.	.						.
Query Sequence	R	D	F	S	F	I	I	K	Q	N	G	M	F	S	F	S	.	.	.	G	L	T	K	E	Q	V	L	R	L	R	E	E	F	G	V	Y	A	V	A	S	G	.	.	.	.	.	.	.	.	R	V	N	V	A	.	G	M	T	P	D	N	M	A	P	L	C	E	A	I	V	A	V	L
Query Conservation																	.	.	.																							.	.	.	.	.	.	.	.						.
Alig confidence																	.	.	.																							.	.	.	.	.	.	.	.						.
Template Conservation
Template Sequence	I	L	A	E	P	G	H	E	S	P	T	I	T	A	V	L	T	P	P	G	I	K	G	D	E	V	Y	E	A	M	R	K	R	G	F	E	L	A	K	G	Y	G	S	V	K	E	K	T	F	R	I	G	H	M	G	Y	M	K	F	E	D	I	Q	E	M	L	D	N	L	R	E	V	I
Template Known Secondary structure	B	S	S		T	T		B		S	S								T	T													T	T								G	G	G	T	T	T								S	S
Template Predicted Secondary structure
Template SS confidence
	304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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