Job Description P00509 Confidence 100.00% Date Thu Jan 5 10:56:40 GMT 2012 Rank 56 Aligned Residues 356 % Identity 19% Template c2douA_ PDB info PDB header:transferase Chain: A: PDB Molecule:probable n-succinyldiaminopimelate aminotransferase; PDBTitle: probable n-succinyldiaminopimelate aminotransferase (ttha0342) from2 thermus thermophilus hb8 Resolution 2.30 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.			.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																			.	.
Query SS confidence																			.	.
Query Sequence		I	T	A	A	P	A	D	P	I	L	G	L	A	D	L	F	R	.	.	A	D	E	R	P	G	K	I	N	L	G	I	G	V	Y	K	D	E	T	G	K	T	P	V	L	T	S	V	K	K	A	E	Q	Y	L	L	E	N	E	T	T	K	N	Y	L	G	I	D	G	I	P	E	F	G	R	C	T	Q	E	L	L
Query Conservation																			.	.
Alig confidence					.	.													.	.														.	.	.	.	.
Template Conservation					.	.																												.	.	.	.	.
Template Sequence		V	P	E	.	.	P	S	V	F	L	V	V	D	E	A	K	R	K	A	R	E	R	G	V	G	L	I	D	L	S	I	G	.	.	.	.	.	S	T	D	L	P	P	P	E	A	P	L	K	A	L	A	E	A	L	N	D	P	T	T	Y	G	Y	C	L	K	S	C	T	L	P	F	L	E	E	A	A	R	W	Y
Template Known Secondary structure					.	.	T																T	T							S	S		.	.	.	.	.																		T	T		G	G	G	S	S
Template Predicted Secondary structure					.	.																												.	.	.	.	.
Template SS confidence
		4	.	.			.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.						.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	G	K	G	S	A	L	I	N	D	K	R	A	R	T	A	Q	T	P	G	G	T	G	A	L	R	V	A	A	D	F	L	A	K	N	T	S	V	K	R	V	W	V	S	N	P	S	W	P	N	H	K	S	V	F	N	S	A	G	L	E	V	R	E	Y	A	Y	Y	D	A	E	N	H	T	L	D	F	D	A	L
Query Conservation
Alig confidence															.																			.	.																																		.	.
Template Conservation															.																			.	.																																		.	.
Template Sequence		E	G	R	Y	G	V	G	L	D	P	R	R	E	.	A	L	A	L	I	G	S	Q	E	G	L	A	H	L	L	L	A	L	.	.	T	E	P	E	D	L	L	L	L	P	E	V	A	Y	P	S	Y	F	G	A	A	R	V	A	S	L	R	T	F	L	I	P	L	.	.	R	E	D	G	L	A	D	L	K	A	V
Template Known Secondary structure						S					T	T	T	S	.					S	S													.	.			T	T							S	S												T	T								B	.	.		T	T	S	S	B		G	G	G	S
Template Predicted Secondary structure															.																			.	.																																		.	.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.			.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140			.	.	.	.	.	.	.	.	.	150	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	N	S	L	N	E	A	Q	A	G	D	V	V	L	F	H	G	C	C	H	N	P	T	G	I	D	P	T	L	E	Q	W	Q	T	L	A	Q	L	S	V	E	K	G	W	L	P	L	F	D	F	A	Y	Q	G	F	A	R	G	L	E	E	D	A	E	G	L	R	A	F	A	A	M	H	K	E	L	I	V	A	S
Query Conservation
Alig confidence											.	.	.																																																	.	.
Template Conservation											.	.	.																																																	.	.
Template Sequence		P	E	G	V	W	R	E	A	K	.	.	.	V	L	L	L	N	Y	P	N	N	P	T	G	A	V	A	D	W	G	Y	F	E	E	A	L	G	L	A	R	K	H	G	L	W	L	I	H	D	N	P	Y	V	D	Q	V	Y	E	G	E	.	.	A	P	S	P	L	A	L	P	G	A	K	E	R	V	V	E	L	F
Template Known Secondary structure											.	.	.						S	S		T	T	T																			T	T								T	T	G	G	G	B	S	S	S		.	.				G	G	G	S	T	T	G	G	G	T
Template Predicted Secondary structure											.	.	.																																																	.	.
Template SS confidence
		152	.	.	.	.	.	.	.	160				.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.			.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Y	S	K	N	F	G	L	Y	N	E	R	V	G	A	C	T	L	V	A	A	D	S	E	T	V	D	R	A	F	S	Q	M	K	A	A	I	R	A	N	Y	S	N	P	P	A	H	G	A	S	V	V	A	T	I	L	S	N	D	A	L	R	A	I	W	E	Q	E	L	T	D	M	R	Q	R	I	Q	R	M	R
Query Conservation
Alig confidence																																			.	.	.	.	.	.	.																				.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.	.																				.	.	.	.	.	.
Template Sequence		S	L	S	K	S	Y	N	L	A	G	F	R	L	G	F	A	L	G	S	E	E	A	L	A	R	L	E	R	V	K	G	V	I	.	.	.	.	.	.	.	D	F	N	Q	Y	A	G	V	L	R	M	G	V	E	A	L	K	T	P	.	.	.	.	.	.	K	E	V	V	R	G	Y	A	R	V	Y	R	E	R	A
Template Known Secondary structure								T		G	G	G																							.	.	.	.	.	.	.				S													T	S		.	.	.	.	.	.
Template Predicted Secondary structure																																			.	.	.	.	.	.	.																				.	.	.	.	.	.
Template SS confidence
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.								260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.							.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.					.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.											.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.																							.	.	.	.	.	.	.	.	.	.
Query SS confidence																															.	.	.	.																							.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	L	F	V	N	T	L	Q	E	K	G	A	N	R	D	F	S	F	I	I	K	Q	N	G	M	F	S	F	S	.	.	.	.	G	L	T	K	E	Q	V	L	R	L	R	E	E	F	G	V	Y	A	V	A	S	G	.	.	.	.	.	.	.	.	.	.	R	V	N	V	A	G	M	T	P	D	N	M	A	P	L
Query Conservation																															.	.	.	.																							.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.															.	.	.	.																							.	.	.	.	.	.	.	.	.	.						.
Template Conservation												.	.	.	.	.																																																								.
Template Sequence		L	G	M	A	E	A	L	K	G	V	.	.	.	.	.	L	S	L	L	P	P	R	A	T	M	Y	L	W	G	R	L	P	E	G	V	D	D	L	E	F	G	L	R	L	V	E	R	G	V	A	L	A	P	G	R	G	F	G	P	G	G	K	G	F	V	R	I	A	L	V	.	R	P	L	E	E	L	L	E	A
Template Known Secondary structure									T	T	T	.	.	.	.	.	S							B	S	S								T	T													T	T						G	G	G	G		G	G	G	T	T								.	S
Template Predicted Secondary structure												.	.	.	.	.																																																								.
Template SS confidence
		294	.	.	.	.	.	300	.	.	.						.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.		.	360	.	.	.	.	.	.	.
		389	390	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	E	A	I	V	A	V	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	K	R	I	R	E	A	L
Template Known Secondary structure								T
Template Predicted Secondary structure
Template SS confidence
		368	.	370	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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