Job Description P00509 Confidence 99.77% Date Thu Jan 5 10:56:40 GMT 2012 Rank 216 Aligned Residues 341 % Identity 12% Template c2cjdA_ PDB info PDB header:transferase Chain: A: PDB Molecule:l-lysine-epsilon aminotransferase; PDBTitle: lysine aminotransferase from m. tuberculosis in external2 aldimine form Resolution 2.00 Å

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.			.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure																																			.	.
Query SS confidence																																			.	.
Query Sequence		I	N	L	G	I	G	V	Y	K	D	E	T	G	K	T	P	V	L	T	S	V	K	K	A	E	Q	Y	L	L	E	N	E	T	.	.	T	K	N	Y	L	G	I	D	G	I	P	E	F	G	R	C	T	Q	E	L	L	F	G	K	G	S	A	L	I	N	D	K	R	A	R	T	A	Q	T	P	G	G	T	G	A
Query Conservation																																			.	.
Alig confidence																		.	.																.	.																																	.	.	.
Template Conservation																		.	.																																																		.	.	.
Template Sequence		L	D	M	F	T	F	V	A	S	S	A	L	G	M	N	P	.	.	P	A	L	V	D	D	R	E	F	H	A	E	L	M	Q	A	A	L	N	K	P	S	N	S	D	V	Y	S	V	A	M	A	R	F	V	E	T	F	A	R	V	L	G	D	P	A	L	P	H	.	.	.	L	F	F	V	E	G	G	A	L	A
Template Known Secondary structure				S	S					T		S	S		B	S		.	.					T													T					T	T	T																				T	T				.	.	.					S	S
Template Predicted Secondary structure																		.	.																																																		.	.	.
Template SS confidence
		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.			.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.				.	.	.	.	.	.	.	.	130	.
		107	.	.	110	.	.	.	.	.	.													.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.															.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.
Query Sequence		L	R	V	A	A	D	F	L	A	K	.	.	.	.	.	.	.	.	.	.	.	.	N	T	S	V	K	R	V	W	V	S	N	P	S	W	P	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	K	S	V	F	N	S	A	G	L	E	V	R	E	Y	A	Y	Y	D	A	E	N	H	T	.	.	.	.
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.
Template Conservation
Template Sequence		V	E	N	A	L	K	A	A	F	D	W	K	S	R	H	N	Q	A	H	G	I	D	P	A	L	G	T	Q	V	L	H	L	R	G	A	F	H	G	R	S	G	Y	T	L	S	L	T	N	T	K	P	T	I	T	A	R	F	P	K	F	D	W	P	R	I	D	A	P	Y	M	R	P	G	L	D	E	P	A	M	A
Template Known Secondary structure																				T	T	S		T	T									T	T					S	S	T	T	G	G	G	T			S						T	T	S															T	T
Template Predicted Secondary structure
Template SS confidence
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
						157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.		.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure		.	.	.	.																							.
Query SS confidence		.	.	.	.																							.
Query Sequence		.	.	.	.	L	D	F	D	A	L	I	N	S	L	N	E	A	Q	A	G	D	V	V	L	F	H	.	G	C	C	H	N	P	T	G	I	D	P	T	L	E	Q	W	Q	T	L	A	Q	L	S	V	E	K	G	W	L	P	L	F	D	F	A	Y	Q	G	F	A	R	G	L	E	E	D	A	E	G	L	R	A	F
Query Conservation		.	.	.	.																							.
Alig confidence		.	.	.	.																							.																																													.	.	.
Template Conservation																																																																									.	.	.
Template Sequence		A	L	E	A	E	A	L	R	Q	A	R	A	A	F	E	T	R	P	H	D	I	A	C	F	V	A	E	P	I	Q	G	E	G	G	D	R	H	F	R	P	E	F	F	A	A	M	R	E	L	C	D	E	F	D	A	L	L	I	F	D	E	V	Q	T	G	C	G	L	T	G	T	.	.	.	A	W	A	Y	Q	Q
Template Known Secondary structure																		S	T	T	T								S			S	T	T	T																			T	T								T	T	T	T	T	T	T	T	S	S	.	.	.	S	S	T
Template Predicted Secondary structure																																																																									.	.	.
Template SS confidence
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.				.	.	.	.	.	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	M	H	K	E	L	I	V	A	S	S	Y	S	K	N	F	G	L	Y	N	E	R	V	G	A	C	T	L	V	A	A	D	S	E	T	V	D	R	A	F	S	Q	M	K	A	A	I	R	A	N	Y	S	N	P	P	A	H	G	A	S	V	V	A	T	I	L	S	N	D	A	L	R	A	I	W	E	Q	E	L
Query Conservation
Alig confidence										.	.	.																					.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.
Template Conservation										.	.	.																					.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.
Template Sequence		L	D	V	A	P	D	I	V	.	.	.	A	F	G	K	K	T	Q	V	C	G	V	M	A	G	R	R	V	D	E	V	.	.	.	.	.	.	.	A	D	N	V	F	A	V	P	S	R	L	N	S	T	W	G	G	N	L	T	D	M	V	R	A	R	R	I	L	E	.	.	.	.	.	.	.	.	V	I	E	A
Template Known Secondary structure			T				S			.	.	.				G	G	G	S	S							G	G	G	G	G	S	.	.	.	.	.	.	.	T	T		T	T	T	S	T	T	S	S			S	S	S	S														.	.	.	.	.	.	.	.
Template Predicted Secondary structure										.	.	.																					.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.
Template SS confidence
		289	290	.	.	.	.	.	.				.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.								.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.									.	.	.	350
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.			.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.				.	.	.	.	.	.	370	.	.	.					.	.			.	.	.	.	380
Predicted Secondary structure																						.	.																																	.	.	.											.	.	.	.			.	.
Query SS confidence																						.	.																																	.	.	.											.	.	.	.			.	.
Query Sequence		T	D	M	R	Q	R	I	Q	R	M	R	Q	L	F	V	N	T	L	Q	E	.	.	K	G	A	N	R	D	F	S	F	I	I	K	Q	N	G	M	F	S	F	S	G	L	T	K	E	Q	V	L	R	L	R	E	.	.	.	E	F	G	V	Y	A	V	A	S	G	.	.	.	.	R	V	.	.	N	V	A	G	M
Query Conservation																						.	.																																	.	.	.											.	.	.	.			.	.
Alig confidence																						.	.																																	.	.	.											.	.	.	.			.	.				.
Template Conservation																																																																																.
Template Sequence		E	G	L	F	E	R	A	V	Q	H	G	K	Y	L	R	A	R	L	D	E	L	A	A	D	F	P	A	V	V	L	D	P	R	G	R	G	L	M	C	A	F	S	L	P	T	T	A	D	R	D	E	L	I	R	Q	L	W	Q	R	A	V	I	V	L	P	A	G	A	D	T	V	R	F	R	P	P	L	T	.	V
Template Known Secondary structure			T																							S	T	T	T	S							T	T							S	S														T	T							T	T	T								T	T	.
Template Predicted Secondary structure																																																																																.
Template SS confidence
		351	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.		.
		381	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	P	D	N	M	A	P	L	C	E	A	I	V	A	V	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	T	A	E	I	D	A	A	I	A	A	V	R	S	A	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions