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Job DescriptionP23173
Confidence1.78%DateThu Jan 5 11:39:16 GMT 2012
Rank66Aligned Residues152
% Identity9%Templatec3mkuA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:multi antimicrobial extrusion protein (na(+)/drug PDBTitle: structure of a cation-bound multidrug and toxin compound extrusion2 (mate) transporter
Resolution4.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   208.210.........220.........230.........240.........250.........260.........270.........280.......
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Query Sequence  FHGNIPSLIICYGKRKDKLIKSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCL
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Template Sequence  GAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQ
Template Known Secondary structure  GGGSS


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   295....300.........310.........320.........330.........340.........350.........360.........370....
 
   288.290.........300.........310.........320.........330.........340. ........350........
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Query Sequence  LVFSNLAVASSFFGVTLGLFDYLADLFKIDNSHGGRFKTVLLTFLPPALLYLIF. . . . . . . . . PNGFIYGIGGAGLCATI
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Template Sequence  VVAAGS. . . . . . . . . . . . . . . . . . . . LRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLS
Template Known Secondary structure  ....................GGGSSSSS

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   375....380 .........390.........400.........410.........420.........430....
 
   359360.........370.........
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Query Sequence  WAVIIPAVLAIKARKKFPNQM
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Template Conservation     
          
      
Template Sequence  AAALMLGQRLYWLQKQSDDVQ
Template Known Secondary structure  TGGGSTTT

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   435....440.........450.....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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