Job Description P23173 Confidence 99.93% Date Thu Jan 5 11:39:16 GMT 2012 Rank 3 Aligned Residues 406 % Identity 8% Template c2jlnA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:mhp1; PDBTitle: structure of mhp1, a nucleobase-cation-symport-1 family2 transporter Resolution 2.85 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.		.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																																.
Query SS confidence																																.
Query Sequence		T	D	Q	A	E	K	K	H	S	A	F	W	G	V	M	V	I	A	G	T	V	I	G	G	G	M	F	A	L	P	.	V	D	L	A	G	A	W	F	F	W	G	A	F	I	L	I	I	A	W	F	S	M	L	H	S	G	L	L	L	L	E	A	N	L	N	Y	P	V	G	S	S	F	N	T	I	T	K	D	L
Query Conservation																																.
Alig confidence																																.																																						.	.
Template Conservation																																																																						.	.
Template Sequence		T	R	Y	A	E	R	S	V	G	P	F	S	L	A	A	I	W	F	A	M	A	I	Q	V	A	I	F	I	A	A	G	Q	M	T	S	S	F	Q	V	W	Q	V	I	V	A	I	A	A	G	C	T	I	A	V	I	L	L	F	F	T	Q	S	A	A	I	R	W	G	.	.	I	N	F	T	V	A	A	R	M	P
Template Known Secondary structure				G	G	G			B															S	T										T	T	T	S																								T								.	.							T	T	T	T
Template Predicted Secondary structure																																																																						.	.
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.			.	.	90	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		I	G	N	T	W	N	I	I	S	G	I	T	V	A	F	V	L	Y	I	L	T	Y	A	Y	I	S	A	N	G	A	I	I	S	E	T	I	S	M	N	L	G	Y	H	A	N	P	R	I	V	G	I	C	T	A	I	F	V	A	S	V	L	W	L	S	S	L	A	A	S	R	I	T	S	L	F	L	G	L	K	I
Query Conservation
Alig confidence																																							.
Template Conservation																																							.
Template Sequence		F	G	I	R	G	S	L	I	P	I	T	L	K	A	L	L	S	L	F	W	F	G	F	Q	T	W	L	G	A	L	A	L	D	E	I	T	R	.	L	L	T	G	F	T	N	L	P	L	W	I	V	I	F	G	A	I	Q	V	V	T	T	F	Y	G	I	T	F	I	R	W	M	N	V	F	A	S	P	V	L	L
Template Known Secondary structure		S		T	T	T	T																																.																								T	T
Template Predicted Secondary structure																																							.
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.		.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.			.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.
Query SS confidence															.	.
Query Sequence		I	S	F	V	I	V	F	G	S	F	F	F	Q	.	.	V	D	Y	S	I	L	R	D	A	T	S	S	T	A	G	T	S	Y	F	P	Y	I	F	M	A	L	P	V	C	L	A	S	F	G	F	H	G	N	I	P	S	L	I	I	C	Y	G	K	R	K	D	K	L	I	K	S	V	V	F	G	S	L	L	A	L
Query Conservation															.	.
Alig confidence															.	.
Template Conservation
Template Sequence		A	M	G	V	Y	M	V	Y	L	M	L	D	G	A	D	V	S	L	G	E	V	M	S	M	G	G	E	N	P	G	M	P	F	S	T	A	I	M	I	F	V	G	G	W	I	A	V	V	V	S	I	H	D	I	V	K	E	C	K	V	D	P	N	A	S	R	E	G	Q	T	K	A	D	A	R	Y	A	T	A	Q
Template Known Secondary structure																T							T	T				S	S			S											T	T	T					T	T	T					T	T	B				T	T
Template Predicted Secondary structure
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	Y	L	F	W	L	Y	C	T	M	G	N	I	P	R	E	S	F	K	A	I	I	S	S	G	G	N	V	D	S	L	V	K	S	F	L	G	T	K	Q	H	G	I	I	E	F	C	L	L	V	F	S	N	L	A	V	A	S	S	F	F	G	V	T	L	G	L	F	D	Y	L	A	D	L	F	K	I	D	N
Query Conservation
Alig confidence																																																																							.	.	.
Template Conservation																																																																							.	.	.
Template Sequence		W	L	G	M	V	P	A	S	I	I	F	G	F	I	G	A	A	S	M	V	L	V	G	E	W	N	P	V	I	A	I	T	E	V	V	G	G	V	S	I	P	M	A	I	L	F	Q	V	F	V	L	L	A	T	W	S	T	N	P	A	A	N	L	L	S	P	A	Y	T	.	.	.	L	C	S	T	F	P	R	V
Template Known Secondary structure																								S		S											T																				T	T						T							.	.	.					S	T	T	T
Template Predicted Secondary structure																																																																							.	.	.
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.				.	.	.	.	330	.	.	.
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	H	G	G	R	F	K	T	V	L	L	T	F	L	P	P	A	L	L	Y	L	I	F	P	N	G	F	I	Y	G	I	G	G	A	G	L	C	A	T	I	W	A	V	I	I	P	A	V	L	A	I	K	A	R	K	K	F	P	N	Q	M	F	T	V	W	G	G	N	L	I	P	A	I	V	I	L	F	G	I	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	T	F	K	T	G	V	I	V	S	A	V	V	G	L	L	M	M	P	W	Q	F	A	G	V	L	N	T	F	L	N	L	L	A	S	A	L	G	P	L	A	G	I	M	I	S	D	Y	F	L	V	R	R	R	R	I	S	L	H	D	L	Y	R	T	K	G	I	Y	T	Y	W	R	G	V	N	W	V	A	L	A
Template Known Secondary structure																		T		G	G	G	T														T	T													T	T	S	T	T								T	B	S	S	S	T	T		T	B	T	T	B
Template Predicted Secondary structure
Template SS confidence
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	L	C	W	F	G	N	V	F	N	V	L	P	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	Y	A	V	A	L	A	V	S	F	L	T	P	D	L
Template Known Secondary structure												T		G	G	G
Template Predicted Secondary structure
Template SS confidence
		414	.	.	.	.	.	420	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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