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Job DescriptionP45549
Confidence100.00%DateThu Jan 5 12:03:06 GMT 2012
Rank17Aligned Residues342
% Identity18%Templatec3q3qA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:alkaline phosphatase; PDBTitle: crystal structure of spap: an novel alkaline phosphatase from2 bacterium sphingomonas sp. strain bsar-1
Resolution1.95 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.........60...... ...70.... ....
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Query Sequence  ARFVVLVIDSFGVGAMKDVTLVRPQDAGANTCGHILSQLPHLQLPTLETLGLINALGYAPGDMQP. . SDSATWGV. AELQ
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Template Sequence  KLIVAISVDQFS. . . . . . . . . . . ADLFS. . . . . . . EYRQYY. . TGGLKRLTSEGAVFPRGYQSHAATETCPGHSTILTGS
Template Known Secondary structure  STT

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   41........50.. ..... ..60... ......70.........80.........90.........100
 
   7980........ .90.........100.........110.........120.........130.........
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Query Sequence  HEGGDTFMGH. . . . . . . . . . . . . . . . . . . QEILGTRPLPPLRMPFRDVIDRVEQALVSAGWQVERRGDDLQFLWVNQAVA
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Template Sequence  RPSRTGIIANNWFDLDAKREDKNLYCAEDESQPGSSSDKYEASPLHLKVPTLGGRMKAANPATRVVSVAGKDRAA. . . . .
Template Known Secondary structure 



SS
TT
SSS

TTB
TTSTT
BTTB

B
STT

S


TT

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   101........110.........120.........130.........140.........150.........160.........170.....
 
   140.........150.........160.........170.........180.........190.........200.........210.........
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Query Sequence  IGDNLEADLGQVYNITANLSVISFDDAIKIGRIVREQVQVGRVITFGGLLTDSQRILDAAESKEGRFIGINAPRSGAYDN
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Template Sequence  . . . . . . . . . . . . . . . . . IMMGGATADQVWWLGGPQGYVSYKGVAPTPLVTQVNQAFAQRLAQPNPGFELPAQCVSKDFPV
Template Known Secondary structure  .................
TT
S
STT

STT



TS
B





GGGGGG


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   176...180.........190.........200.........210.........220.........230........
 
   220.........230.........240.........250.........260.........270.........280.........290.........
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Query Sequence  GFQVVHMGYGVDEKVQVPQKLYEAGVPTVLVGKVADIVNNPYGVSWQNLVDSQRIMDITLNEFNTHPTAFICTNIQETDL
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Template Sequence  QAGNRTVGTGRFARDAGDYKGFR. . . . . . . . . . . . . . . . . ISPEQDAMTLAFAAAAIENMQLGKQAQTDIISIGLSATDY
Template Known Secondary structure  TTS




B
TT
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   239240.........250.........260. ........270.........280.........290.........300.
 
   300... ......310.........320........ .330.........340...
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Query Sequence  AGHA. . EDVARYAERLQVVDRNLARLVEAMQ. . . PDDCLVVMADHGNDP. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  VGHTFGTEGTESCIQVDRLDTELGAFFDKLDKDGIDYVVVLTADHGGHDLPERHRMNAMPMEQRVDMALTPKALNATIAE
Template Known Secondary structure 
SSSTT


S





TTTT
TT


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   302.......310.........320.........330.........340.........350.........360.........370.........380.
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  KAGLPGKKVIWSDGPSGDIYYDKGLTAAQRARVETEALKYLRAHPQVQTVFTKAEIAATPSPSGPPESWSLIQEARASFY
Template Known Secondary structure  T
TTS

SSSS
TT

STTTS



S
GGG

T

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   382.......390.........400.........410.........420.........430.........440.........450.........460.
 
   344.... .350.........360.........370.........380.........390. .
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . TIGHS. HHTREVVPVLVYQQGMIATQLGVRTTLSDVGATVCEFFRAPPP. . . Q
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Template Sequence  PSRSGDLLLLLKPRVMSIPEQAVMGSVATHGSPWDTDRRVPILFWRKGMQHFEQPLGVETVDILPSLAALIKLPVPKDQI
Template Known Secondary structure  TTTS
S
TTSS


SS
S






SSTT




S
GGGTT



GGG
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   462.......470.........480.........490.........500.........510.........520.........530.........540.
 
   393......400..
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Query Sequence  NGRSFLSSLR
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Template Sequence  DGRCLDLVAG
Template Known Secondary structure  S





S
S
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   542.......550.
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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