Job Description P45549 Confidence 100.00% Date Thu Jan 5 12:03:06 GMT 2012 Rank 1 Aligned Residues 383 % Identity 26% Template c3m8yC_ PDB info PDB header:isomerase Chain: C: PDB Molecule:phosphopentomutase; PDBTitle: phosphopentomutase from bacillus cereus after glucose-1,6-bisphosphate2 activation Resolution 2.10 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	F	V	V	L	V	I	D	S	F	G	V	G	A	M	K	D	V	T	L	V	R	P	Q	D	A	G	A	N	T	C	G	H	I	L	S	Q	L	P	H	L	Q	L	P	T	L	E	T	L	G	L	I	N	A	L	G	Y	A	P	G	D	M	Q	P	S	D	S	A	T	W	G	V	A	E	L	Q	H	E	G
Query Conservation
Alig confidence																							.	.
Template Conservation																							.	.
Template Sequence		K	R	I	F	L	V	V	M	D	S	V	G	I	G	E	A	P	D	A	E	Q	.	.	F	G	D	L	G	S	D	T	I	G	H	I	A	E	H	M	N	G	L	Q	M	P	N	M	V	K	L	G	L	G	N	I	R	E	M	K	G	I	S	K	V	E	K	P	L	G	Y	Y	T	K	M	Q	E	K	S	T	G
Template Known Secondary structure		S								T	T				S	B		T	T	T	T	T	.	.	T	T		T	T												T	S										T							B	T	T	B				S	S		S	S									S	S
Template Predicted Secondary structure																							.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.			.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.		.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure																						.
Query SS confidence																						.
Query Sequence		G	D	T	F	M	G	H	Q	E	I	L	G	T	R	P	L	P	P	L	R	.	M	P	F	R	D	V	I	D	R	V	E	Q	A	L	V	S	A	G	W	Q	V	E	R	R	G	D	D	L	Q	F	L	W	V	N	Q	A	V	A	I	G	D	N	L	E	A	D	L	G	Q	V	Y	N	I	T	A	N	L	S	V
Query Conservation																						.
Alig confidence				.																		.																														.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.																																																.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	D	.	M	T	G	H	W	E	I	M	G	L	Y	I	D	T	P	F	Q	V	F	P	E	G	F	P	K	E	L	L	D	E	L	E	E	K	T	G	R	K	I	I	G	N	K	P	A	S	G	.	.	.	.	.	.	.	.	.	.	.	T	E	I	L	D	E	L	G	Q	E	Q	M	E	T	G	S	L	I	V
Template Known Secondary structure				.								T	T					S						T	T															S												.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure				.																																																.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		83	.		.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.												.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		I	S	F	D	D	A	I	K	I	G	R	I	V	R	E	Q	V	Q	V	G	R	V	I	T	F	G	G	L	L	T	D	S	Q	R	I	L	D	A	A	E	S	K	E	G	R	F	I	G	I	N	A	P	R	S	G	A	Y	D	N	G	F	Q	V	V	H	M	G	Y	G	V	D	E	K	V	Q	V	P	Q	K	L
Query Conservation
Alig confidence																								.	.	.
Template Conservation																								.	.	.
Template Sequence		Y	T	S	A	D	S	V	L	Q	I	A	A	H	E	E	V	V	P	L	D	E	L	.	.	.	Y	K	I	C	K	I	A	R	E	L	T	L	D	E	K	Y	M	V	G	R	V	I	A	R	P	F	V	G	E	P	G	N	F	T	R	T	P	N	R	H	D	Y	A	L	K	P	F	G	R	T	V	M	N	E	L
Template Known Secondary structure					S	S	S								T	T	T	S						.	.	.											T	T	S	G	G	G			S											T	T						S										S	S
Template Predicted Secondary structure																								.	.	.
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.				.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																													.
Query SS confidence																																																													.
Query Sequence		Y	E	A	G	V	P	T	V	L	V	G	K	V	A	D	I	V	N	N	P	Y	G	V	S	W	Q	N	L	V	D	S	Q	R	I	M	D	I	T	L	N	E	F	N	T	H	P	T	A	F	I	C	T	N	I	Q	E	T	D	L	.	A	G	H	A	E	D	V	A	R	Y	A	E	R	L	Q	V	V	D	R	N
Query Conservation																																																													.
Alig confidence																																																													.
Template Conservation
Template Sequence		K	D	S	D	Y	D	V	I	A	I	G	K	I	S	D	I	Y	D	G	E	G	V	T	E	S	L	R	T	K	S	N	M	D	G	M	D	K	L	V	D	T	L	N	M	D	F	T	G	L	S	F	L	N	L	V	D	F	D	A	L	F	G	H	R	R	D	P	Q	G	Y	G	E	A	L	Q	E	Y	D	A	R
Template Known Secondary structure				T	T							T	T					T	T	T	T	T		S						S	S													T	S																T	T	T	T	T	T														T	T
Template Predicted Secondary structure
Template SS confidence
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.			.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure																																																.	.
Query SS confidence																																																.	.
Query Sequence		L	A	R	L	V	E	A	M	Q	P	D	D	C	L	V	V	M	A	D	H	G	N	D	P	T	I	G	H	S	H	H	T	R	E	V	V	P	V	L	V	Y	Q	Q	G	M	I	.	.	A	T	Q	L	G	V	R	T	T	L	S	D	V	G	A	T	V	C	E	F	F	R	A	P	P	P	Q	N	G	R	S	F
Query Conservation																																																.	.
Alig confidence																																																.	.
Template Conservation
Template Sequence		L	P	E	V	F	A	K	L	K	E	D	D	L	L	L	I	T	A	D	H	G	N	D	P	I	H	P	G	T	D	H	T	R	E	Y	V	P	L	L	A	Y	S	P	S	M	K	E	G	G	Q	E	L	P	L	R	Q	T	F	A	D	I	G	A	T	V	A	E	N	F	G	V	K	M	P	E	Y	G	T	S	F
Template Known Secondary structure											T	T								S	S	B			T	T	S	S	S	S	S		B		B									T	T		T	T				B				B	S	S	T												T					S	S
Template Predicted Secondary structure
Template SS confidence
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
		398	.	400	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	S	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	N	E	L
Template Known Secondary structure		S	T	T
Template Predicted Secondary structure
Template SS confidence
		389	390	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions