Job Description P45549 Confidence 100.00% Date Thu Jan 5 12:03:06 GMT 2012 Rank 6 Aligned Residues 334 % Identity 13% Template c2zktB_ PDB info PDB header:isomerase Chain: B: PDB Molecule:2,3-bisphosphoglycerate-independent phosphoglycerate PDBTitle: structure of ph0037 protein from pyrococcus horikoshii Resolution 2.40 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.					.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.
Predicted Secondary structure																																											.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																											.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	A	R	F	V	V	L	V	I	D	S	F	G	V	G	A	M	K	D	V	T	L	V	R	P	Q	D	A	G	A	N	T	C	G	H	I	L	S	Q	L	P	.	.	.	.	H	L	Q	L	P	T	L	E	T	L	G	L	I	N	A	L	G	Y	A	P	G	D	M	Q	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																											.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	R	K	G	L	L	I	I	L	D	G	L	G	D	R	P	I	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	L	N	G	L	T	P	L	E	Y	A	N	T	P	N	M	D	K	L	A	E	I	G	I	L	G	Q	Q	D	P	I	K	P	G	Q	P	A	G	S	D	T	A	H	L
Template Known Secondary structure											T	T	B	B				B	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	T	T	B						S												S							S	S	S	T	T
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.																			.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.
		66	.	.	.	70	.	.	.	.		.	.	.	.	.	80							.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure											.							.	.	.	.	.	.
Query SS confidence											.							.	.	.	.	.	.
Query Sequence		P	S	D	S	A	T	W	G	V	.	A	E	L	Q	H	E	.	.	.	.	.	.	G	G	D	T	F	M	G	H	Q	E	I	L	G	T	R	P	L	P	P	L	R	M	P	F	R	D	V	I	D	R	V	E	Q	A	L	V	S	A	G	W	Q	V	E	R	R	G	D	D	L	Q	F	L	W	V	N	Q	A	V
Query Conservation											.							.	.	.	.	.	.
Alig confidence											.							.	.	.	.	.	.																																																					.	.	.	.	.	.
Template Conservation																																																																												.	.	.	.	.	.
Template Sequence		S	I	F	G	Y	D	P	Y	E	T	Y	R	G	R	G	F	F	E	A	L	G	V	G	L	D	L	S	K	D	D	L	A	F	R	V	N	F	A	T	L	E	N	A	R	A	I	Q	E	E	V	D	I	G	V	D	F	I	F	K	T	G	H	R	A	V	L	V	L	K	G	M	S	R	G	.	.	.	.	.	.
Template Known Secondary structure				T	T										S								T	T					T	T																																		S	S								S	T	T	.	.	.	.	.	.
Template Predicted Secondary structure																																																																												.	.	.	.	.	.
Template SS confidence
		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	G	D	N	L	E	A	D	L	G	Q	V	Y	N	I	T	A	N	L	S	V	I	S	F	D	D	A	I	K	I	G	R	I	V	R	E	Q	V	Q	V	G	R	V	I	T	F	G	G	L	L	T	D	S	Q	R	I	L	D	A	A	E	S	K	E	G	R	F	I	G	I	N	A	P	R	S	G	A	Y	D
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	K	V	G	D	N	D	P	H	E	A	G	K	P	P	S	K	K	V	A	E	I	L	E	E	F	V	K	K	A	Q	E	V	L	E	K	H	P	I	N	E	R	R	R	K	E	G	K	P	I
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							T	T		G	G	G																							T	T	S									T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.							.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure																										.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.
Query Sequence		N	G	F	Q	V	V	H	M	G	Y	G	V	D	E	K	V	Q	V	P	Q	K	L	Y	E	.	.	.	.	.	.	A	G	V	P	T	V	L	V	G	K	V	A	D	I	V	N	N	P	Y	G	V	S	W	Q	N	L	V	D	S	Q	R	I	M	D	I	T	L	N	E	F	N	T	H	P	T	A	F	I	C	T
Query Conservation																										.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.
Template Conservation
Template Sequence		A	N	Y	L	L	I	R	G	A	G	T	Y	P	N	I	P	M	K	F	T	E	Q	W	K	V	K	A	A	G	V	I	A	V	A	L	V	K	G	V	A	R	A	V	G	F	D	V	Y	T	P	E	G	A	T	G	E	Y	N	T	N	E	M	A	K	A	K	K	A	V	E	L	L	K	D	Y	D	F	V	F	L
Template Known Secondary structure													S				S	S							T									S										T	T							T	T			S	S	T	T															T	T		S
Template Predicted Secondary structure
Template SS confidence
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.		.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
Predicted Secondary structure																																						.
Query SS confidence																																						.
Query Sequence		N	I	Q	E	T	D	L	A	G	H	A	E	D	V	A	R	Y	A	E	R	L	Q	V	V	D	R	N	L	A	R	L	V	E	A	M	Q	.	P	D	D	C	L	V	V	M	A	D	H	G	N	D	P	T	I	G	H	S	H	H	T	R	E	V	V	P	V	L	V	Y	Q	Q	G	M	I	A	T	Q	L	G	V
Query Conservation																																						.
Alig confidence																																						.																			.	.
Template Conservation																																																									.	.
Template Sequence		H	F	K	P	T	D	A	A	G	H	D	N	K	P	K	L	K	A	E	L	I	E	R	A	D	R	M	I	G	Y	I	L	D	H	V	D	L	E	E	V	V	I	A	I	T	G	D	H	S	T	P	C	E	V	M	.	.	N	H	S	G	D	P	V	P	L	L	I	A	G	G	G	V	R	T	D	D	T	K	R
Template Known Secondary structure												T	T																					T	T			T	T	T								S	S	B			T	T	T	T	.	.	S		B										S	T	T					S			S
Template Predicted Secondary structure																																																									.	.
Template SS confidence
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.			.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
														372	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	R	T	T	L	S	D	V	G	A	T	V	C	E	F	F	R	A	P	P
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	G	E	R	E	A	M	K	G	G	L	G	R	I	R	G	H	D	I	V	P	I	M	M	D	L	M	N	R	S	E
Template Known Secondary structure			S					T	T		T	T					G	G	G									T	T
Template Predicted Secondary structure
Template SS confidence
		378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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