Job Description P45549 Confidence 100.00% Date Thu Jan 5 12:03:06 GMT 2012 Rank 2 Aligned Residues 363 % Identity 28% Template c2i09A_ PDB info PDB header:isomerase Chain: A: PDB Molecule:phosphopentomutase; PDBTitle: crystal structure of putative phosphopentomutase from streptococcus2 mutans Resolution 2.00 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.				.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.						.	.	.	.	.	.	70	.	.
Predicted Secondary structure																												.	.	.																																						.	.	.	.	.
Query SS confidence																												.	.	.																																						.	.	.	.	.
Query Sequence		M	A	R	F	V	V	L	V	I	D	S	F	G	V	G	A	M	K	D	V	T	L	V	R	P	Q	.	.	.	D	A	G	A	N	T	C	G	H	I	L	S	Q	L	P	H	L	Q	L	P	T	L	E	T	L	G	L	I	N	A	L	G	Y	A	P	G	D	.	.	.	.	.	M	Q	P	S	D	S	A	T	W
Query Conservation																												.	.	.																																						.	.	.	.	.
Alig confidence																												.	.	.													.																									.	.	.	.	.
Template Conservation																																											.
Template Sequence		F	N	R	I	H	L	V	V	L	D	S	V	G	I	G	A	A	P	D	A	N	N	F	S	N	A	G	V	P	D	G	A	S	D	T	L	G	H	I	S	K	.	T	V	G	L	N	V	P	N	M	A	K	I	G	L	G	N	I	P	R	D	T	P	L	K	T	V	P	A	E	N	H	P	T	G	Y	V	T	K
Template Known Secondary structure			S								T	T				S	B		T	T	G	G	G	S			T	T			G	G	G										.		T											T	G	G	G	S			S	S			T	T					S	S		S	S
Template Predicted Secondary structure																																											.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.		.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.		.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure																																					.
Query SS confidence																																					.
Query Sequence		G	V	A	E	L	Q	H	E	G	G	D	T	F	M	G	H	Q	E	I	L	G	T	R	P	L	P	P	L	R	M	P	F	R	D	V	.	I	D	R	V	E	Q	A	L	V	S	A	G	W	Q	V	E	R	R	G	D	D	L	Q	F	L	W	V	N	Q	A	V	A	I	G	D	N	L	E	A	D	L	G	Q	V
Query Conservation																																					.
Alig confidence					.	.																															.																																			.	.	.	.	.	.
Template Conservation					.	.																																																																		.	.	.	.	.	.
Template Sequence		L	E	E	.	.	V	S	L	G	K	D	T	M	T	G	H	W	E	I	M	G	L	N	I	T	E	P	F	D	T	F	W	N	G	F	P	E	E	I	I	S	K	I	E	K	F	S	G	R	K	V	I	R	E	A	N	K	P	Y	S	G	T	G	E	L	I	I	Y	T	S	.	.	.	.	.	.	A	D	P	V
Template Known Secondary structure					.	.		S	S			S									T	T				S	S						T	T															S			B		G	G	G		S	B							B						.	.	.	.	.	.	S	S	S
Template Predicted Secondary structure					.	.																																																																		.	.	.	.	.	.
Template SS confidence
		83	.	.			.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150							.	.	.	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	N	I	T	A	N	L	S	V	I	S	F	D	D	A	I	K	I	G	R	I	V	R	E	Q	V	Q	V	G	R	V	I	T	F	G	G	L	L	T	D	S	Q	R	I	L	D	A	A	E	S	K	E	G	R	F	I	G	I	N	A	P	R	S	G	A	Y	D	N	G	F	Q	V	V	H	M	G	Y	G	V	D
Query Conservation
Alig confidence																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	Q	I	A	A	H	E	D	V	I	P	L	D	E	L	Y	R	I	C	E	Y	A	R	S	I	T	L	E	R	P	A	L	L	G	R	I	I	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	P	T	A	N	R	H	D	Y	A	L	S	P
Template Known Secondary structure								T	T	T	S																	S	S	T	T	S			S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.																														.	.	.	.	210	.	.	.	.	.	.	.	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.		.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.			.	.	.	290	.	.	.	.	.	.	.	.	.		300	.	.	.	.	.	.	.
Predicted Secondary structure																																.																										.	.														.
Query SS confidence																																.																										.	.														.
Query Sequence		E	K	V	Q	V	P	Q	K	L	Y	E	A	G	V	P	T	V	L	V	G	K	V	A	D	I	V	N	N	P	Y	.	G	V	S	W	Q	N	L	V	D	S	Q	R	I	M	D	I	T	L	N	E	F	N	T	H	P	.	.	T	A	F	I	C	T	N	I	Q	E	T	D	L	.	A	G	H	A	E	D	V	A
Query Conservation																																.																										.	.														.
Alig confidence																																.																										.	.														.
Template Conservation
Template Sequence		F	A	P	T	V	L	N	K	L	A	D	A	G	V	S	T	Y	A	V	G	K	I	N	D	I	F	N	G	S	G	I	T	N	D	M	G	H	N	K	S	N	S	H	G	V	D	T	L	I	K	T	M	G	L	S	A	F	T	K	G	F	S	F	T	N	L	V	D	F	D	A	L	Y	G	H	R	R	N	A	H
Template Known Secondary structure		S	S										T	T							T	T					T	T	T	T	T		S							S	S															S	S			S														T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Y	A	E	R	L	Q	V	V	D	R	N	L	A	R	L	V	E	A	M	Q	P	D	D	C	L	V	V	M	A	D	H	G	N	D	P	T	I	G	H	S	H	H	T	R	E	V	V	P	V	L	V	Y	Q	Q	G	M	I	A	T	Q	L	G	V	R	T	T	L	S	D	V	G	A	T	V	C	E	F	F	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	Y	R	D	C	L	H	E	F	D	E	R	L	P	E	I	I	A	A	M	K	V	D	D	L	L	L	I	T	A	D	H	G	N	D	P	T	Y	A	G	T	D	H	T	R	E	Y	V	P	L	L	A	Y	S	P	S	F	T	G	N	G	V	L	P	V	G	H	Y	A	D	I	S	A	T	I	A	D	N	F	G
Template Known Secondary structure																				T			T	T								S	S	B			T	T	S	S	S	S	S		B		B									T	T		S										T	T										T	T
Template Predicted Secondary structure
Template SS confidence
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
		388	.	390	.	.	.	.	.	.	.	.	.	400	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	P	P	P	Q	N	G	R	S	F	L	S	S	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	D	T	A	M	I	G	E	S	F	L	D	K	L
Template Known Secondary structure						S	S
Template Predicted Secondary structure
Template SS confidence
		389	390	.	.	.	.	.	.	.	.	.	400	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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