 |
Job Description | P0AAT6 | Confidence | 7.43% | Date | Thu Jan 5 11:13:47 GMT 2012 |
Rank | 56 | Aligned Residues | 75 |
% Identity | 13% | Template | c1e5dA_ |
PDB info |
PDB header:oxidoreductase | Chain: A: PDB Molecule:rubredoxin\:oxygen oxidoreductase; |
PDBTitle: rubredoxin oxygen:oxidoreductase (roo) from anaerobe2 desulfovibrio gigas
|
Resolution | 2.5 Å |
|
 |
  |   |
2 | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | |
|
|
|
|
|
|
|
. | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|  | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Q | G | K | A | L | Q | D | F | V | I | D | K | I | D | D | L | K | G | Q | D | I | I | A | L | D | V | Q | G | K | S | S | . |
. |
. |
. |
. |
. |
. |
. |
I | T | D | C | M | I | I | C | T | G | T | S | S | R | H | V | M | S | I | A | D | H | V | V | Q | E | S | R | A | A | G | L | L | P | L | G | V | E | G | E | N |
Query Conservation |   |
  |   |   |   |
|   |   |   |
|   |   |   |
|   |   |
|
|
|   |
|
|   |
|
|
|
|   |   |   |   |   | . | . | . | . | . | . | . | . |   |   |
|
|   |
|
|
|
|   |   |
|   |
|
|   |   |
|
|
|   |   |
|   |   |   |
|
|   |   |   |   |   |   |   |   |   |
|
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |   |
|
|   |   |
|   |   |   |
|   |   |   | . |
|   |
|
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |
|
|   |
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |   |   |   |   |
|   |   |   |
|
|   |
Template Sequence |   |
S | T | E | K | M | A | R | V | L | A | E | S | F | R | D | E | . |
G | C | T | V | K | L | M | W | C | K | A | C | H | H | S | Q | I | M | S | E | I | S | D | A | G | A | V | I | V | G | S | P | T | H | N | N | G | I | L | P | Y | V | A | G | T | L | Q | Y | I | K | G | L | R | P | Q | N | K | I | G | G | A | F | G |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | . | T |
|  |  |  |  |  |  | T | T | T | S |
|  |  |  |  |  |  |  |  |  | T |
| S |  |  |  |  |  |
|
|
| B | T | T | B |
|
|  |  |  |  |  |  |  |  |  |  |  |  | T |
|
|
| S |
|  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| . |
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
265 | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | |
. | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . |
  |
  |   |
74 | . | . | . |
Predicted Secondary structure |   |
|
|
|  |
Query SS confidence |   |
|
|
|
|
Query Sequence |   |
S | A | D | W |
Query Conservation |   |
  |   |   |
|
Alig confidence |   |
|
|
|
|
Template Conservation |   |
|   |
|   |
Template Sequence |   |
S | F | G | W |
Template Known Secondary structure |   |
 |  | S | S |
Template Predicted Secondary structure |   |
|
|
|
|
Template SS confidence |   |
|
|
|
|
  |   |
344 | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|