Phyre 2 alignment of P77554 with d2ftwa2

Job Description P77554
Confidence 99.31% Date Thu Jan 5 12:30:31 GMT 2012

Rank 87 Aligned Residues 291

% Identity 13% Template d2ftwa2

SCOP info TIM beta/alpha-barrel Metallo-dependent hydrolases Hydantoinase (dihydropyrimidinase), catalytic domain

Resolution 2.05

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.						.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																													.	.	.	.	.
Query SS confidence																																													.	.	.	.	.
Query Sequence	P	T	T	R	D	M	H	I	H	L	D	K	T	F	Y	G	G	P	W	R	S	L	N	R	P	A	G	T	T	I	Q	D	M	I	K	L	E	Q	K	M	L	P	E	L	.	.	.	.	.	Q	P	Y	T	Q	E	R	A	E	K	L	I	D	L	L	Q	S	K	G	T	T	I	A	R	S	H	C	N	I	E	P
Query Conservation																																													.	.	.	.	.
Alig confidence																			.	.	.																								.	.	.	.	.
Template Conservation																			.	.	.
Template Sequence	P	G	G	I	D	T	H	T	H	F	Q	L	P	F	M	G	T	V	.	.	.	S	V	D	D	F	D	I	G	T	Q	A	A	V	A	G	G	T	T	F	I	I	D	F	V	I	P	T	R	G	Q	S	L	L	E	A	Y	D	Q	W	K	K	W	A	D	E	K	V	N	C	D	Y	S	L	H	V	A	I	T	W
Template Known Secondary structure										T	T				T	T			.	.	.		S	S												T	T												T	T																T	T		S	S										S
Template Predicted Secondary structure																			.	.	.
Template SS confidence
	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.				.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.

	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.																									.
Predicted Secondary structure																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	V	S	G	L	K	N	L	Q	N	L	Q	A	V	L	A	R	R	Q	A	G	F	E	C	E	I	V	A	F	P	Q	H	G	L	L	L	S	K	S	E	P	L	M	R	E	A	M	Q	A	G	A	H	Y	V	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L
Query Conservation																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.
Template Sequence	W	S	E	Q	V	S	R	E	M	E	I	L	V	K	E	R	G	V	N	S	F	.	C	F	M	A	Y	K	N	S	F	M	V	T	D	Q	E	M	Y	H	I	F	K	R	C	K	E	L	G	A	I	A	Q	V	H	A	E	N	G	D	M	V	F	E	G	Q	K	K	M	L	E	M	G	I	T	G	P	E	G	H
Template Known Secondary structure																S				B		.		B	S	S		T	T	T	T	B																	T		B				B		S															T	T			S	T
Template Predicted Secondary structure																						.
Template SS confidence
	137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.		.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.

	246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	D	P	T	S	V	D	G	A	M	E	K	S	L	D	T	M	F	Q	I	A	L	D	Y	D	K	G	V	D	I	H	L	H	E	T	T	P	A	G	V	A	A	I	N	Y	M	V	E	T	V	E	K	T	P	Q	L	K	G	K	L	T	I	S	H	A	F	A	L	A	T	L	N	E	Q	Q	V	D	E	L	A	N
Query Conservation
Alig confidence																																			.	.	.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.	.	.
Template Sequence	E	L	S	R	P	E	A	L	E	A	E	A	T	N	R	A	I	V	I	A	D	S	V	C	T	P	V	Y	I	V	H	V	Q	S	.	.	.	.	.	.	.	.	I	G	A	A	D	V	I	C	K	H	R	K	E	G	V	R	V	Y	G	E	P	I	A	A	G	L	G	V	D	G	S	H	M	W	N	H	D	W
Template Known Secondary structure				S		T																		T							S				.	.	.	.	.	.	.	.													T	T								B								G	G	G	G	G		S	S
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.
Template SS confidence
	217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250									.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.

	326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.													.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																												.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	R	M	V	V	Q	Q	I	S	I	A	S	T	V	P	I	G	T	L	H	M	P	L	K	Q	L	H	D	K	G	V	K	V	M	T	G	T	D	S	V	I	D	H	W	.	.	.	.	.	.	.	.	.	.	.	.	S	P	Y	G	L	G	D	M	L	E	K	A	N	L	Y	A	Q	L	Y	I	R	P	N	E	Q
Query Conservation																																												.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																												.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	R	H	A	A	A	F	V	M	G	P	P	I	R	P	D	P	R	T	K	G	V	L	M	D	Y	L	A	R	G	D	L	D	C	V	G	T	D	N	C	T	F	C	A	D	Q	K	A	M	G	K	D	D	F	T	K	I	P	N	G	V	N	G	V	E	D	R	M	S	I	V	W	E	N	G	V	N	T	G	K	L
Template Known Secondary structure					T	T			S	S						T	T												T	S	S				B			B									G	G	G	T	T		G	G	G	S				B			T	T	T										T	T	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
	289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.

	394	.	.	.	.	.	400	.	.	.	.	.	.	.	.		.	410	.	.	.	.	.	.	.
Predicted Secondary structure																.
Query SS confidence																.
Query Sequence	N	L	S	R	S	L	F	L	A	T	G	D	V	L	P	.	L	N	E	K	G	E	R	V	W
Query Conservation																.
Alig confidence																.
Template Conservation
Template Sequence	T	W	C	Q	F	V	R	A	T	S	S	E	R	A	R	I	F	N	I	Y	P	R	K	G	R
Template Known Secondary structure										T							T	T		T	T	T	S
Template Predicted Secondary structure
Template SS confidence
	369	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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