Phyre 2 alignment of P77554 with d1kcxa2

Job Description P77554
Confidence 99.46% Date Thu Jan 5 12:30:31 GMT 2012

Rank 75 Aligned Residues 292

% Identity 12% Template d1kcxa2

SCOP info TIM beta/alpha-barrel Metallo-dependent hydrolases Hydantoinase (dihydropyrimidinase), catalytic domain

Resolution 2.12

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.						.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																													.	.	.	.	.
Query SS confidence																																													.	.	.	.	.
Query Sequence	P	T	T	R	D	M	H	I	H	L	D	K	T	F	Y	G	G	P	W	R	S	L	N	R	P	A	G	T	T	I	Q	D	M	I	K	L	E	Q	K	M	L	P	E	L	.	.	.	.	.	Q	P	Y	T	Q	E	R	A	E	K	L	I	D	L	L	Q	S	K	G	T	T	I	A	R	S	H	C	N	I	E	P
Query Conservation																																													.	.	.	.	.
Alig confidence																						.	.	.																					.	.	.	.	.
Template Conservation																						.	.	.
Template Sequence	P	G	G	I	D	V	N	T	Y	L	Q	K	P	S	Q	G	M	T	S	A	D	.	.	.	D	F	F	Q	G	T	K	A	A	L	A	G	G	T	T	M	I	I	D	H	V	V	P	E	P	G	S	S	L	L	T	S	F	E	K	W	H	E	A	A	D	T	K	S	C	C	D	Y	S	L	H	V	D	I	T	S
Template Known Secondary structure										T	T				T	T				S	S	.	.	.												T	T												T	T																			S	S
Template Predicted Secondary structure																						.	.	.
Template SS confidence
	67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.				.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.

	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	V	S	G	L	K	N	L	Q	N	L	Q	A	V	L	A	R	R	Q	A	G	F	E	C	E	I	V	A	F	P	Q	H	G	L	L	L	S	K	S	E	P	L	M	R	E	A	M	Q	A	G	A	H	Y	V	G	G	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	W	Y	D	G	V	R	E	E	L	E	V	L	V	Q	D	K	G	V	N	S	F	Q	V	Y	M	A	Y	K	D	L	Y	Q	M	S	D	S	Q	L	Y	E	A	F	T	F	L	K	G	L	G	A	V	I	L	V	H	A	E	N	G	D	L	I	A	Q	E	Q	K	R	I	L	E	M	G	I	T	G	P	E	G	H
Template Known Secondary structure			T	T											T	T									S		S	T	T	T	T																	T	T																							T	T			S	T
Template Predicted Secondary structure
Template SS confidence
	144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.

	246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	D	P	T	S	V	D	G	A	M	E	K	S	L	D	T	M	F	Q	I	A	L	D	Y	D	K	G	V	D	I	H	L	H	E	T	T	P	A	G	V	A	A	I	N	Y	M	V	E	T	V	E	K	T	P	Q	L	K	G	K	L	T	I	S	H	A	F	A	L	A	T	L	N	E	Q	Q	V	D	E	L	A	N
Query Conservation
Alig confidence																																			.	.	.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.	.	.
Template Sequence	A	L	S	R	P	E	E	L	E	A	E	A	V	F	R	A	I	A	I	A	G	R	I	N	C	P	V	Y	I	T	K	V	M	S	.	.	.	.	.	.	.	.	K	S	A	A	D	I	I	A	L	A	R	K	K	G	P	L	V	F	G	E	P	I	A	A	S	L	G	T	D	G	T	H	Y	W	S	K	N	W
Template Known Secondary structure				S		T																		T											.	.	.	.	.	.	.	.														S								B								G	G	G	G	G		S	S
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.
Template SS confidence
	224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.									.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.

	326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.													.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																									.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	R	M	V	V	Q	Q	I	S	I	A	S	T	V	P	I	G	T	L	H	M	P	L	K	Q	L	H	D	K	G	V	K	V	M	T	G	T	D	S	V	I	.	.	.	.	.	.	.	.	.	.	.	.	D	H	W	S	P	Y	G	L	G	D	M	L	E	K	A	N	L	Y	A	Q	L	Y	I	R	P	N	E	Q
Query Conservation																																									.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																									.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	A	K	A	A	A	F	V	T	S	P	P	L	S	P	D	P	T	T	P	D	Y	L	T	S	L	L	A	C	G	D	L	Q	V	T	G	S	G	H	C	P	Y	S	T	A	Q	K	A	V	G	K	D	N	F	T	L	I	P	E	G	V	N	G	I	E	E	R	M	T	V	V	W	D	K	A	V	A	T	G	K	M
Template Known Secondary structure						T			S	S				S		T	T												T	S	S				B			B									G	G	G	S	S		G	G	G	S				B			T	T	T										T	T	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
	296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.

	394	.	.	.	.	.	400	.	.	.	.	.	.	.	.		.	410	.	.	.	.	.	.	.
Predicted Secondary structure																.
Query SS confidence																.
Query Sequence	N	L	S	R	S	L	F	L	A	T	G	D	V	L	P	.	L	N	E	K	G	E	R	V	W
Query Conservation																.
Alig confidence																.
Template Conservation
Template Sequence	D	E	N	Q	F	V	A	V	T	S	T	N	A	A	K	I	F	N	L	Y	P	R	K	G	R
Template Known Secondary structure										T								T		T	T	T	S
Template Predicted Secondary structure
Template SS confidence
	376	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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