Phyre 2 alignment of P77554 with d1e9yb2

Job Description P77554
Confidence 97.67% Date Thu Jan 5 12:30:31 GMT 2012

Rank 131 Aligned Residues 265

% Identity 18% Template d1e9yb2

SCOP info TIM beta/alpha-barrel Metallo-dependent hydrolases alpha-subunit of urease, catalytic domain

Resolution 3.00

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	R	D	M	H	I	H	L	D	K	T	F	Y	G	G	P	W	R	S	L	N	R	P	A	G	T	T	I	Q	D	M	I	K	L	E	Q	K	M	L	P	E	L	Q	P	Y	T	Q	E	R	A	E	K	L	I	D	L	L	Q	S	K	G	T	T	I	A	R	S	H	C	N	I	E	P	V	S	G	L	K	N	L	Q
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	I	D	T	H	I	H	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	S	P	Q	Q	I	P	T	A	F	A	S	G	V	T	T	M	I	G	G	G	T	G	P	A	D	G	T	N	A	T	T	I	T	P	G	R	R	N	L	K
Template Known Secondary structure							T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T		T	T								T	T										S	S
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	133	.	.	.	.	.	.																																	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180

	198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	N	L	Q	A	V	L	A	R	R	Q	A	G	F	E	C	E	I	V	A	F	P	Q	H	G	L	L	L	S	K	S	E	P	L	M	R	E	A	M	Q	A	G	A	H	Y	V	G	G	L	D	P	T	S	V	D	G	A	M	E	K	S	L	D	T	M	F	Q	I	A	L	D	Y	D	K	G	V	D	I	H	L	H
Query Conservation
Alig confidence																									.	.	.	.	.	.	.													.	.	.			.
Template Conservation																									.	.	.	.	.	.	.													.	.	.			.
Template Sequence	W	M	L	R	A	A	E	E	Y	S	M	N	L	G	F	L	A	K	G	N	A	S	N	D	.	.	.	.	.	.	.	A	S	L	A	D	Q	I	E	A	G	A	I	.	.	.	G	F	.	I	H	E	D	W	G	T	T	P	S	A	I	N	H	A	L	D	V	A	D	K	Y	D	V	Q	V	A	I	H	T	D
Template Known Secondary structure							T	T	S	S	S					B						S			.	.	.	.	.	.	.									T	T		S	.	.	.	B		.			G	G	G																	T	T		B
Template Predicted Secondary structure																									.	.	.	.	.	.	.													.	.	.			.
Template SS confidence
	181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.								.	.	.	.	.	210	.	.	.	.	.	.				.	.		.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.

	278	.	280	.	.			.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.																	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.										.	330
Predicted Secondary structure						.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.
Query SS confidence						.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.
Query Sequence	E	T	T	P	A	.	.	G	V	A	A	I	N	Y	M	V	E	T	V	E	K	T	P	Q	L	K	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	L	T	I	S	H	A	F	A	L	A	T	L	N	E	Q	Q	V	D	E	L	A	N	R	M	V	.	.	.	.	.	.	.	.	.	V	Q
Query Conservation						.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.
Alig confidence						.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	T	L	N	E	A	G	C	V	E	D	T	M	A	A	I	A	G	R	T	M	H	T	F	H	T	E	G	A	G	G	G	H	A	P	D	I	I	K	V	A	G	E	H	N	I	L	P	A	S	T	N	P	T	I	P	F	T	V	N	T	E	A	E	H	M	D	M	L	M	V	C	H	H	K	D	K	S	I	K	E
Template Known Secondary structure	T	T		S	S											T	T						T	T	T	T	S	T	T	S		S	T	T	T	G	G	G	G	G	G	S	T	T							G	G	G		S		B	T	T												T	T	T			S	S
Template Predicted Secondary structure
Template SS confidence
	251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330

	331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.								.	.	.	.	.	400	.	.	.
Predicted Secondary structure																																																																	.	.	.	.	.	.	.
Query SS confidence																																																																	.	.	.	.	.	.	.
Query Sequence	Q	I	S	I	A	S	T	V	P	I	G	T	L	H	M	P	L	K	Q	L	H	D	K	G	V	K	V	M	T	G	T	D	S	V	I	D	H	W	S	P	Y	G	L	G	D	M	L	E	K	A	N	L	Y	A	Q	L	Y	I	R	P	N	E	Q	N	.	.	.	.	.	.	.	L	S	R	S	L	F	L	A	T
Query Conservation																																																																	.	.	.	.	.	.	.
Alig confidence																																																																	.	.	.	.	.	.	.
Template Conservation
Template Sequence	D	V	Q	F	A	D	S	R	I	R	P	Q	T	I	A	A	E	D	T	L	H	D	M	G	A	F	S	I	T	S	S	D	S	Q	A	M	G	R	V	G	E	V	I	T	R	T	W	Q	T	A	D	K	N	K	K	E	F	G	R	L	K	E	E	K	G	D	N	D	N	F	R	I	K	R	Y	L	S	K	Y	T
Template Known Secondary structure																							T	T	S								T	T	S	S			T	T	S																		S		S	S			S	S	S										G	G	G	T
Template Predicted Secondary structure
Template SS confidence
	331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410

	404	.	.	.	.		.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.
Predicted Secondary structure						.
Query SS confidence						.
Query Sequence	G	D	V	L	P	.	L	N	E	K	G	E	R	V	W	P	K	A	Q	D	D	A	S
Query Conservation						.
Alig confidence						.
Template Conservation
Template Sequence	I	N	P	A	I	A	H	G	I	S	E	Y	V	G	S	V	E	V	G	K	V	H	H
Template Known Secondary structure							T	T		T	T	T	S	S	S	S		T	T
Template Predicted Secondary structure
Template SS confidence
	411	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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