Job Description P77554 Confidence 100.00% Date Thu Jan 5 12:30:31 GMT 2012 Rank 22 Aligned Residues 376 % Identity 14% Template c3v7pA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:amidohydrolase family protein; PDBTitle: crystal structure of amidohydrolase nis_0429 (target efi-500396) from2 nitratiruptor sp. sb155-2 Resolution 1.35 Å

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		55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.			100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
Predicted Secondary structure																																															.	.
Query SS confidence																																															.	.
Query Sequence		Y	L	D	N	V	L	L	E	T	G	F	D	Y	E	N	G	V	A	V	Q	T	R	T	A	R	Q	T	V	E	I	Q	D	G	K	I	V	A	L	R	E	N	K	L	H	P	.	.	D	A	T	L	P	H	Y	D	A	G	G	K	L	M	L	P	T	T	R	D	M	H	I	H	L	D	K	T	F	Y	G	G	P
Query Conservation																																															.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.																										.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.
Template Sequence		I	I	K	P	F	A	I	L	T	P	.	.	.	.	.	.	.	.	.	.	Q	T	I	I	Q	D	K	A	V	A	F	D	K	K	I	E	A	I	D	T	V	E	N	L	I	K	K	Y	P	N	A	A	V	E	H	D	E	N	S	L	L	L	P	G	F	A	N	P	H	L	H	L	E	F	S	A	N	K	A	T
Template Known Secondary structure											S	.	.	.	.	.	.	.	.	.	.	S	S				S						S	S	B															T	T	S																					G	G	G	T	T		S	S
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.											.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	R	S	L	N	R	P	A	G	T	T	I	Q	D	M	I	K	L	E	Q	K	M	L	P	E	L	Q	P	Y	T	Q	E	R	A	E	K	L	I	D	L	L	Q	S	K	G	T	T	I	A	R	S	H	C	N	I	E	P	V	S	G	L	K	N	L	Q	N	L	Q	A	V	L	A	R	R	Q	A	G	F	E	C
Query Conservation
Alig confidence						.	.																				.	.	.																															.	.	.	.	.
Template Conservation						.	.																				.	.	.																															.	.	.	.	.
Template Sequence		L	Q	Y	G	.	.	D	F	I	P	W	L	Y	S	V	I	R	H	R	E	D	L	L	P	L	.	.	.	C	D	G	A	C	L	E	Q	T	L	S	S	I	I	Q	T	G	T	T	A	I	G	A	I	S	S	Y	G	E	D	.	.	.	.	.	L	Q	A	C	I	D	S	A	L	K	V	V	Y	F	N	E	V
Template Known Secondary structure		S			S	.	.	S																			.	.	.	S															T	T									S	S	S	T	T	.	.	.	.	.							B	S	S
Template Predicted Secondary structure						.	.																				.	.	.																															.	.	.	.	.
Template SS confidence
		73	.	.	.			.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.				.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.						.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure																													.
Query SS confidence																													.
Query Sequence		E	I	V	A	F	P	Q	H	G	L	L	L	S	K	S	E	P	L	M	R	E	A	M	Q	A	G	A	.	H	Y	V	G	G	L	D	P	T	S	V	D	G	A	M	E	K	S	L	D	T	M	F	Q	I	A	L	D	Y	D	K	G	V	D	I	H	L	H	E	T	T	P	A	G	V	A	A	I	N	Y	M	V
Query Conservation																													.
Alig confidence																													.
Template Conservation
Template Sequence		I	G	S	N	A	A	T	A	D	V	M	Y	A	S	F	L	E	R	F	H	Q	S	K	K	H	E	N	E	R	F	K	A	A	V	A	I	H	S	P	Y	S	V	H	Y	I	L	A	K	R	A	L	D	I	A	K	K	Y	G	S	L	V	S	V	H	F	M	E	S	R	A	E	R	E	W	L	D	K	G	S	G
Template Known Secondary structure			B			G	G	G																	T	T		B	T	T										T	T	T	B																T								S		S										S		S
Template Predicted Secondary structure
Template SS confidence
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
		292	.	.	.	.	.																.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	T	V	E	K	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	Q	L	K	G	K	L	T	I	S	H	A	F	A	L	A	T	L	N	E	Q	Q	V	D	E	L	A	N	R	M	V	V	Q	Q	I	S	I	A	S	T	V	P	I	G	T	L	H	M	P	L	K	Q	L	H	D	K	G	V	K
Query Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																						.	.
Template Conservation																																																																												.	.
Template Sequence		E	F	A	K	F	F	K	E	F	L	N	Q	T	R	P	V	N	D	T	K	S	F	L	E	L	F	K	E	L	H	T	L	F	V	H	M	V	W	A	N	E	E	E	I	Q	T	I	A	S	Y	N	A	H	I	I	H	C	P	I	S	N	R	L	L	G	N	G	V	L	D	L	E	K	I	.	.	K	S	I	P
Template Known Secondary structure											T				S		S	S								T	T	T	T	S								T	T												S														T	T						T	T	T	T	.	.	T	T	S
Template Predicted Secondary structure																																																																												.	.
Template SS confidence
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.			.	.	.	300
		357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.		390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.
Predicted Secondary structure																																			.																																												.	.	.
Query SS confidence																																			.																																												.	.	.
Query Sequence		V	M	T	G	T	D	S	V	I	D	H	W	S	P	Y	G	L	G	D	M	L	E	K	A	N	L	Y	A	Q	L	Y	I	R	.	P	N	E	Q	N	L	S	R	S	L	F	L	A	T	G	D	V	L	P	L	N	E	K	G	E	R	V	W	P	K	A	Q	D	D	A	S	F	V	L	V	D	A	S	.	.	.
Query Conservation																																			.																																												.	.	.
Alig confidence										.	.	.	.																						.																								.																				.	.	.
Template Conservation										.	.	.	.																																														.
Template Sequence		Y	A	I	A	T	D	G	L	.	.	.	.	S	S	N	Y	S	L	N	M	Y	E	E	L	K	A	A	L	F	V	H	P	N	K	E	A	T	T	F	A	K	E	L	I	I	R	A	T	K	A	G	Y	D	A	L	G	F	.	E	G	G	E	I	A	V	G	K	D	A	D	M	Q	L	I	D	L	P	E	G	L
Template Known Secondary structure									T	.	.	.	.	T	S		S															S	T	T	S														T								T		.	S		S	S			T	T	S	B										T	T
Template Predicted Secondary structure										.	.	.	.																																														.
Template SS confidence
		301	.	.	.	.	.	.	.					.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.		.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
							433	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.
Query SS confidence		.	.	.	.	.
Query Sequence		.	.	.	.	.	C	S	A	E	A	V	A	R	I	S	P	R	T	A	T	F	H	K	G	Q	L	V	W	G	S
Query Conservation		.	.	.	.	.
Alig confidence		.	.	.	.	.
Template Conservation
Template Sequence		T	N	V	E	D	L	Y	L	H	V	I	L	H	T	T	K	P	K	K	V	Y	I	Q	G	E	E	H	V	R	N
Template Known Secondary structure				G	G	G										S	S		S					T	T
Template Predicted Secondary structure
Template SS confidence
		376	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions