Job Description P77554 Confidence 99.98% Date Thu Jan 5 12:30:31 GMT 2012 Rank 49 Aligned Residues 349 % Identity 15% Template c3ooqC_ PDB info PDB header:hydrolase Chain: C: PDB Molecule:amidohydrolase; PDBTitle: crystal structure of amidohydrolase from thermotoga maritima msb8 Resolution 2.06 Å

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		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	Y	L	D	N	V	L	L	E	T	G	F	D	Y	E	N	G	V	A	V	Q	T	R	T	A	R	Q	T	V	E	I	Q	D	G	K	I	V	A	L	R	E	N	K	L	H	P	D	A	T	L	P	H	Y	D	A	G	G	K	L	M	L	P	T	T	R	D	M	H	I	H	L	D	K	T	F	Y	G	G	P	W
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.			.																									.	.
Template Conservation													.	.	.	.	.	.	.	.			.																									.	.
Template Sequence		I	L	F	K	N	A	T	V	F	P	I	.	.	.	.	.	.	.	.	T	S	.	R	P	F	K	G	D	V	L	V	S	N	G	K	V	E	K	V	G	E	N	I	E	D	P	.	.	D	A	E	I	V	D	L	T	G	K	F	L	F	P	G	F	V	D	A	H	S	H	I	G	L	F	E	E	G	V	G	Y
Template Known Secondary structure												S	.	.	.	.	.	.	.	.	S	S	.											T	T							S					S	.	.	S	S						T	T														T	T	T	S		T	T	S		G
Template Predicted Secondary structure													.	.	.	.	.	.	.	.			.																									.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.									.	.		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.			.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	S	L	N	R	P	A	G	T	T	I	Q	D	M	I	K	L	E	Q	K	M	L	P	E	L	Q	P	Y	T	Q	E	R	A	E	K	L	I	D	L	L	Q	S	K	G	T	T	I	A	R	S	H	C	N	I	E	P	V	S	G	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.
Template Sequence		Y	Y	S	D	G	N	E	A	.	.	.	.	.	.	.	.	T	D	P	V	T	P	H	V	K	A	L	D	G	F	N	P	Q	D	P	A	I	E	R	A	L	A	G	G	V	T	S	V	X	I	V	P	G	S	A	N	P	V	G	G	Q	G	S	V	I	K	F	R	S	I	I	V	E	E	C	I	V	K	D	P
Template Known Secondary structure		G	G			S			T	.	.	.	.	.	.	.	.	T	S	S	B		T	T		B	G	G	G	G			T	T										T	T										S	S	S	S										S			S	S
Template Predicted Secondary structure										.	.	.	.	.	.	.	.
Template SS confidence
		76	.	.	.	80	.	.	.									.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
							194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.
Query SS confidence		.	.	.	.	.
Query Sequence		.	.	.	.	.	K	N	L	Q	N	L	Q	A	V	L	A	R	R	Q	A	G	F	E	C	E	I	V	A	F	P	Q	H	G	L	L	L	S	K	S	E	P	L	M	R	E	A	M	Q	A	G	A	H	Y	V	G	G	L	D	P	T	S	V	D	G	A	M	E	K	S	L	D	T	M	F	Q	I	A	L	D	Y
Query Conservation		.	.	.	.	.
Alig confidence		.	.	.	.	.																																												.	.	.	.	.	.	.	.
Template Conservation																																																		.	.	.	.	.	.	.	.
Template Sequence		A	G	L	K	X	A	F	G	E	N	P	K	R	V	Y	G	E	R	K	Q	T	P	S	T	R	X	G	T	A	G	V	I	R	D	Y	F	T	K	V	K	N	Y	X	K	K	K	E	L	.	.	.	.	.	.	.	.	A	Q	K	E	G	K	E	F	T	E	T	D	L	K	X	E	V	G	E	X	V	L	R	K
Template Known Secondary structure									S										T	T		S		S	S																									.	.	.	.	.	.	.	.				T	T																		T	T
Template Predicted Secondary structure																																																		.	.	.	.	.	.	.	.
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.									.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		D	K	G	V	D	I	H	L	H	E	T	T	P	A	G	V	A	A	I	N	Y	M	V	E	T	V	E	K	T	P	Q	L	K	G	K	L	T	I	S	H	A	F	A	L	A	T	L	N	E	Q	Q	V	D	E	L	A	N	R	M	V	V	Q	Q	I	S	I	A	S	T	V	P	I	G	T	L	H	M	P	.	.
Query Conservation																																																																																.	.
Alig confidence													.	.	.	.	.	.	.	.																											.	.	.	.																														.	.
Template Conservation													.	.	.	.	.	.	.	.																											.	.	.	.
Template Sequence		K	I	P	A	R	X	H	A	H	R	A	.	.	.	.	.	.	.	.	D	D	I	L	T	A	I	R	I	A	E	E	F	G	F	N	L	V	I	E	H	G	T	E	A	Y	.	.	.	.	K	I	S	K	V	L	A	E	K	K	I	P	V	V	V	G	P	L	L	T	F	R	T	K	L	E	L	K	D	L	T
Template Known Secondary structure		S	S								S		.	.	.	.	.	.	.	.														T									T	T	G	G	.	.	.	.	G	G							T	T									S	S				S	G	G	G	T	T
Template Predicted Secondary structure													.	.	.	.	.	.	.	.																											.	.	.	.
Template SS confidence
		220	.	.	.	.	.	.	.	.	.	230									.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.					.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
					347	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.		.	410	.	.	.	.	.	.	.	.	.	420	.	.
Predicted Secondary structure		.	.	.																																																															.
Query SS confidence		.	.	.																																																															.
Query Sequence		.	.	.	L	K	Q	L	H	D	K	G	V	K	V	M	T	G	T	D	S	V	I	D	H	W	S	P	Y	G	L	G	D	M	L	E	K	A	N	L	Y	A	Q	L	Y	I	R	P	N	E	Q	N	L	S	R	S	L	F	L	A	T	G	D	V	L	P	.	L	N	E	K	G	E	R	V	W	P	K	A	Q	D
Query Conservation		.	.	.																																																															.
Alig confidence		.	.	.																	.	.	.	.	.	.																					.	.	.	.																	.
Template Conservation																					.	.	.	.	.	.																					.	.	.	.
Template Sequence		X	E	T	I	A	K	L	L	K	D	G	V	L	I	A	L	X	C	D	.	.	.	.	.	.	H	P	V	I	P	L	E	F	A	T	V	Q	A	A	T	A	X	R	Y	G	.	.	.	.	A	K	E	E	D	L	L	K	I	L	T	V	N	P	A	K	I	L	G	L	E	D	R	I	G	S	I	E	P	G	K
Template Known Secondary structure		T	T								T	T								T	.	.	.	.	.	.	T	T	T	S		G	G	G								G	G	G	G	T	.	.	.	.									T	T	T							T	T		T	T	T	S	S	S			T	T	S
Template Predicted Secondary structure																					.	.	.	.	.	.																					.	.	.	.
Template SS confidence
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.							.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.					.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
		423	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	S	F	V	L	V	D	A	S	C	S	A	E	A	V	A	R	I	S	P	R	T	A	T	F	H	K	G	Q	L	V	W
Query Conservation
Alig confidence													.	.	.	.
Template Conservation													.	.	.	.
Template Sequence		D	A	D	L	V	V	W	S	G	H	P	.	.	.	.	F	D	X	K	S	V	V	E	R	V	Y	I	D	G	V	E	V	F
Template Known Secondary structure		B							S	S		T	.	.	.	.	T	S	T	T									T	T
Template Predicted Secondary structure													.	.	.	.
Template SS confidence
		358	.	360	.	.	.	.	.	.	.	.					.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions