Phyre 2 alignment of P77554 with c3f4cA

Job Description P77554
Confidence 98.75% Date Thu Jan 5 12:30:31 GMT 2012

Rank 110 Aligned Residues 267

% Identity 13% Template c3f4cA_

PDB info PDB header:hydrolase Chain: A: PDB Molecule:organophosphorus hydrolase; PDBTitle: crystal structure of organophosphorus hydrolase from geobacillus2 stearothermophilus strain 10, with glycerol bound

Resolution 2.07 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	113	.	.				.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.
Query SS confidence				.	.	.
Query Sequence	M	L	P	.	.	.	T	T	R	D	M	H	I	H	L	D	K	T	F	Y	G	G	P	W	R	S	L	N	R	P	A	G	T	T	I	Q	D	M	I	K	L	E	Q	K	M	L	P	E	L	Q	P	Y	T	Q	E	R	A	E	K	L	I	D	L	L	Q	S	K	G	T	T	I	A	R	S	H	C	N	I	E	P
Query Conservation				.	.	.
Alig confidence				.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.
Template Sequence	V	P	V	E	Q	L	G	K	T	L	I	H	E	H	F	L	F	G	Y	P	G	F	Q	G	D	V	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	G	T	F	R	E	D	E	A	L	R	V	A	V	E	A	A	E	K	M	K	R	H	G	I	Q	T	V	V	D	P	.	.	.	T	P
Template Known Secondary structure			G	G	G			S			S									T	T	G	G	G	G		T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S																				T	T	T								.	.	.
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.
Template SS confidence
	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.																		.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.				.	.

	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.														.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.								.	.	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.
Query SS confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.
Query Sequence	V	S	G	L	K	N	L	Q	N	L	Q	A	V	L	A	R	R	Q	A	G	F	E	C	E	I	V	A	F	P	Q	H	G	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	L	S	K	S	E	P	L	M	R	E	A	M	Q	A	G	A	H	Y	V	G	.	.	.	.	.	.	.	G	L	D	P	T	S
Query Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.
Template Conservation
Template Sequence	N	D	C	G	R	N	P	A	F	L	R	R	V	A	E	E	T	G	L	N	I	I	C	A	T	G	Y	Y	Y	E	G	E	G	A	P	P	Y	F	Q	F	R	R	L	L	G	T	A	E	D	D	I	Y	D	M	F	M	A	E	L	T	E	G	I	A	D	T	G	I	K	A	G	V	I	L	A	S	S	K	G	R
Template Known Secondary structure	G	G	G	T																				B						T	T	S	S		T										T																T		S	T	T	S					S	B			B		B	T	T	B
Template Predicted Secondary structure
Template SS confidence
	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.

	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	V	D	G	A	M	E	K	S	L	D	T	M	F	Q	I	A	L	D	Y	D	K	G	V	D	I	H	L	H	E	T	T	P	A	G	V	A	A	I	N	Y	M	V	E	T	V	E	K	T	P	Q	L	K	G	K	L	T	I	S	H	A	F	A	L	A	T	L	N	E	Q	Q	V	D	E	L	A	N	R	M	V	V
Query Conservation
Alig confidence																																			.	.	.	.	.																								.	.
Template Conservation																																			.	.	.	.	.																								.	.
Template Sequence	I	T	E	Y	E	K	M	F	F	R	A	A	A	R	A	Q	K	E	T	G	A	V	I	I	T	H	T	Q	E	G	T	M	G	P	.	.	.	.	.	E	Q	A	A	Y	L	L	E	H	G	A	D	P	K	K	I	V	I	G	H	M	C	G	.	.	N	T	D	P	D	Y	H	R	K	T	L	A	Y	G	V	Y
Template Known Secondary structure																						B				B		S	T	T					.	.	.	.	.									T	T			G	G	G						G	G	G	.	.												T	T	T
Template Predicted Secondary structure																																			.	.	.	.	.																								.	.
Template SS confidence
	251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.						.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.			.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.

	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.							.	.	.	.	350	.	.	.	.	.			.	.	.	.	360	.	.	.	.	.	.	.	.	.	370															.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.											.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.											.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	Q	Q	I	S	I	A	S	T	V	P	I	G	T	L	H	M	.	.	.	.	.	.	P	L	K	Q	L	H	D	K	G	V	.	.	K	V	M	T	G	T	D	S	V	I	D	H	W	S	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	G	L	G	D	M	L	E	K	A	N	L	Y	A	Q	L	Y
Query Conservation																	.	.	.	.	.	.											.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.											.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	I	A	F	D	R	F	G	I	Q	G	M	V	G	A	P	T	D	E	E	R	V	R	T	L	L	A	L	L	R	D	G	Y	E	K	Q	I	M	L	S	H	D	T	V	N	V	W	L	G	R	P	F	T	L	P	E	P	F	A	E	M	M	K	N	W	H	V	E	H	L	F	V	N	I	I	P	A	L	K	N	E
Template Known Secondary structure						T	T			S	S	S	S																	T	T		G	G	G													S	S												T	T	T		S	T	T					T							T	T
Template Predicted Secondary structure
Template SS confidence
	324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.

	388	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410
Predicted Secondary structure
Query SS confidence
Query Sequence	I	R	P	N	E	Q	N	L	S	R	S	L	F	L	A	T	G	D	V	L	P	L	N
Query Conservation
Alig confidence		.	.	.	.
Template Conservation		.	.	.	.
Template Sequence	G	.	.	.	.	I	R	D	E	V	L	E	Q	M	F	I	G	N	P	A	A	L	F
Template Known Secondary structure	T	.	.	.	.											T
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
	404					.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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