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Job DescriptionP77554
Confidence100.00%DateThu Jan 5 12:30:31 GMT 2012
Rank10Aligned Residues390
% Identity18%Templatec3e0lB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:guanine deaminase; PDBTitle: computationally designed ammelide deaminase
Resolution2.37 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   51........60.........70.........80...... ...90........ .100.........110.........120.
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Query Sequence  DPHYYLDNVLLETGFDYENGVAVQTRTARQTVEIQD. GKIVALRENKLH. . . . . . . . PDATLPHYDAGGKLMLPTTRDMH
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Template Sequence  PLAHIFRGTFVHST. . . . . WTCPMEVLRDHLLGVSDSGKIVFLEEASQQEKLAKEWCFKPCEIRELSHHEFFMPGLVDTH
Template Known Secondary structure 

S.....TT
TTSBGGGTT

GGG


TT

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   8.10.........20. ........30.........40.........50.........60.........70.........80..
 
   122.......130.........140.........150.........160.........170.........180.........190.........200.
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Query Sequence  IHLDKTFYGGPWRSLNRPAGTTIQDMIKLEQKMLPELQPYTQERAEKLIDLLQSKGTTIARSHCNIEPVSGLKNLQNLQA
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Template Sequence  IHASQYSFAGSSIDLP. . . LLEWLTKYTFPAEHRFQNIDFAEEVYTRVVRRTLKNGTTTACYFATIHTDSSLLLADITDK
Template Known Secondary structure  GGGGGGTTS


S
...TGGGSTTT

S
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   83......90........ .100.........110.........120.........130.........140.........150.........
 
   202.......210.........220.... .....230.........240.........250.........260.........270.....
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Query Sequence  VLARRQAGFECEIVAFPQHGLLL. . . . . . SKSEPLMREAMQAGAHYVGGLDPTSVDGAMEKSLDTMFQIALDYDKGVDIH
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Template Sequence  FGQRAFVGKVCMDLNDTFPEYKETTEESIKETERFVSEMLQKNYSRVKPIV. TPGNGVSETLMGELGNIAKTRDLHIQSH
Template Known Secondary structure  T


S

SSSTTS


TT

SS.
SS

TT
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   160.........170.........180.........190.........200.........210 .........220.........230........
 
   276...280......... 290.........300.........310.........320.........330.........340.........
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Query Sequence  LHETTPAGVAAINY. . . . . . MVETVEKTPQLKGKLTISHAFALATLNEQQVDELANRMVVQQISIASTVPIGTLHMPLKQ
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Template Sequence  ISENRDEVEAVKNLYPSYKNYTSVYDKNNLLTNKTVMAHGCYLS. . . AEELNVFHERGASIAHCPNSNLSLSSGFLNVLE
Template Known Secondary structure  S
SSTTSSSTTT

STT
TT

...T

TT




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   239240.........250.........260.........270.........280.. .......290.........300.........310.....
 
   350.........360.........370.........380......... 390.........400........ .410.........420.
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Query Sequence  LHDKGVKVMTGTDSVIDHWSPYGLGDMLEKANLYAQLYIR. . . . . . . PNEQNLSRSLFLATGDVLP. LNEKGERVWPKAQ
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Template Sequence  VLKHEVKIGLGTDV. . . . . AGGYSYSMLDAIRRAVMVSNILLINKVNEKSLTLKEVFRLATLGGSQALGLDGEIGNFEVG
Template Known Secondary structure  TT



T.....TTS



TTSSSS


TTT
TTTSSS

TT
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   316...320......... 330.........340.........350.........360.........370.........380.........390
 
   422.......430.........440.. .......450.......
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Query Sequence  DDASFVLVDASCSAEAVARIS. . . . . . . . . . . . . . . . . . . . . . PRTATFHKGQLVWGS
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Template Sequence  KEFDAILINPKASDSPIDLFYGDFFGDISEAVIQKFLYLGDDRNIEEVYVGGKQVVPF
Template Known Secondary structure  SB


TT
TT
S



TTSSSS
GGGT

GGGTTS
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   391........400.........410.........420.........430.........440........
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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