Job Description P77554 Confidence 100.00% Date Thu Jan 5 12:30:31 GMT 2012 Rank 23 Aligned Residues 376 % Identity 14% Template c3d6nA_ PDB info PDB header:hydrolase/transferase Chain: A: PDB Molecule:dihydroorotase; PDBTitle: crystal structure of aquifex dihydroorotase activated by aspartate2 transcarbamoylase Resolution 2.30 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	Y	Y	L	D	N	V	L	L	E	T	G	F	D	Y	E	N	G	V	A	V	Q	T	R	T	A	R	Q	T	V	E	I	Q	D	G	K	I	V	A	L	R	E	N	K	L	H	P	D	A	T	L	P	H	Y	D	A	G	G	K	L	M	L	P	T	T	R	D	M	H	I	H	L	D	K	T	F	Y	G	G	P
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.																									.	.
Template Conservation														.	.	.	.	.	.	.	.																									.	.
Template Sequence		K	L	I	V	K	N	G	Y	V	I	D	P	.	.	.	.	.	.	.	.	S	Q	N	L	E	G	E	F	D	I	L	V	E	N	G	K	I	K	K	I	D	K	N	I	.	.	L	V	P	E	A	E	I	I	D	A	K	G	L	I	V	C	P	G	F	I	D	I	H	V	H	L	R	D	P	G	Q	T	Y	K
Template Known Secondary structure							S						G	.	.	.	.	.	.	.	.	G	G	T				S							T	T							S	S		.	.			T	T							T	T	S															T	T	T		T	T	T
Template Predicted Secondary structure														.	.	.	.	.	.	.	.																									.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.									.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.			.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	R	S	L	N	R	P	A	G	T	T	I	Q	D	M	I	K	L	E	Q	K	M	L	P	E	L	Q	P	Y	T	Q	E	R	A	E	K	L	I	D	L	L	Q	S	K	G	T	T	I	A	R	S	H	C	N	I	E	P	V	S	G	L	K	N	L	Q	N	L	Q	A	V	L	A	R	R	Q	A	G	F	E	C
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	D	I	E	S	G	S	R	C	A	V	A	G	G	F	T	T	I	V	C	M	P	N	T	N	P	P	I	D	N	T	T	V	V	N	Y	I	L	Q	K	S	K	S	V	G	L	C	R	V	L	P	T	G	T	I	T	K	G	R	K	G	K	E	I	A	D	F	Y	S	L	K	E	A	G	C	V	A	F	T	D
Template Known Secondary structure														T	T								S		S	S	S		S		S																S	S						B		S	B	G	G	G		S	S	S	B										T				B
Template Predicted Secondary structure
Template SS confidence
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.																					.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	I	V	A	F	P	Q	H	G	L	L	L	S	K	S	E	P	L	M	R	E	A	M	Q	A	G	A	H	Y	V	G	G	L	D	P	T	S	V	D	G	A	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	K	S	L	D	T	M	F	Q	I	A	L	D	Y	D	K	G	V
Query Conservation																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.
Template Sequence		D	G	S	P	V	M	D	.	.	.	.	S	S	V	M	R	K	A	L	E	L	A	S	Q	L	G	V	P	I	M	D	H	C	E	D	D	K	L	A	Y	G	V	I	N	E	G	E	V	S	A	L	L	G	L	S	S	R	A	P	E	A	E	E	I	Q	I	A	R	D	G	I	L	A	Q	R	T	G	G	H	V
Template Known Secondary structure		T	T	S					.	.	.	.														T	T										T	T	T	B		S	S			T	T
Template Predicted Secondary structure									.	.	.	.
Template SS confidence
		153	.	.	.	.	.	.					160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	H	L	H	E	T	T	P	A	G	V	A	A	I	N	Y	M	V	E	T	V	E	K	T	P	Q	L	K	G	K	L	T	I	S	H	A	F	A	L	A	T	L	N	E	Q	Q	V	D	E	L	A	N	R	M	V	V	Q	Q	I	S	I	A	S	T	V	P	I	G	T	L	H	M	P	L	K	Q	L	H	D
Query Conservation
Alig confidence									.	.	.	.	.	.	.	.																																													.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.	.																																													.	.	.	.	.
Template Sequence		H	I	Q	H	V	S	T	.	.	.	.	.	.	.	.	K	L	S	L	E	I	I	E	F	F	K	E	K	G	V	K	I	T	C	E	V	N	P	N	H	L	L	F	T	E	R	E	V	L	N	S	G	A	N	A	R	V	N	P	.	.	.	.	.	P	L	R	K	K	E	D	R	L	A	L	I	E	G	V	K
Template Known Secondary structure									.	.	.	.	.	.	.	.												T	T	T																T	T						G	G	G	G			S	S	.	.	.	.	.
Template Predicted Secondary structure									.	.	.	.	.	.	.	.																																													.	.	.	.	.
Template SS confidence
		229	230	.	.	.	.	.									.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.						280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
		353	.	.	.	.	.	.	360	.	.	.	.									.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.
Query Sequence		K	G	V	K	V	M	T	G	T	D	S	V	.	.	.	.	.	.	.	.	I	D	H	W	S	P	Y	G	L	G	D	M	L	E	K	A	N	L	Y	A	Q	L	Y	I	R	P	N	E	Q	N	L	S	R	S	L	F	L	A	T	G	D	V	L	P	L	N	E	K	G	E	R	V	W	P	K	A	Q	D	D	A
Query Conservation														.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.																									.																								.
Template Conservation																																														.																								.
Template Sequence		R	G	I	I	D	C	F	A	T	D	H	A	P	H	Q	T	F	E	K	E	L	V	E	F	A	M	P	G	I	I	G	L	Q	T	A	L	P	S	A	L	E	L	Y	R	.	K	G	I	I	S	L	K	K	L	I	E	M	F	T	I	N	P	A	R	I	I	G	V	.	D	L	G	T	L	K	L	G	S	P	A
Template Known Secondary structure		T	T		S							B					G	G	G	S	S	S	G	G	G					B			T	T	T											.	T	T	S	S								T	T	T								T		.	S		S				T	T	S	B
Template Predicted Secondary structure																																														.																								.
Template SS confidence
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.		.	.	.	.	.	.	.	370	.	.	.
		425	.	.	.	.	430	.	.	.																	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	F	V	L	V	D	A	S	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	A	E	A	V	A	R	I	S	P	R	T	A	T	F	H	K	G	Q	L	V	W	G	S
Query Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	I	T	I	F	D	P	N	K	E	W	I	L	N	E	E	T	N	L	S	K	S	R	N	T	P	L	W	G	K	V	L	K	G	K	V	I	Y	T	I	K	D	G	K	M	V	Y	K	D
Template Known Secondary structure															S	T	T	T			S	S					T	T	T	T													T	T
Template Predicted Secondary structure
Template SS confidence
		374	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.