Phyre 2 alignment of P77554 with c2r8cB

Job Description P77554
Confidence 100.00% Date Thu Jan 5 12:30:31 GMT 2012

Rank 24 Aligned Residues 377

% Identity 15% Template c2r8cB_

PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative amidohydrolase; PDBTitle: crystal structure of uncharacterized protein eaj56179

Resolution 2.31 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
Predicted Secondary structure
Query SS confidence
Query Sequence	P	H	Y	Y	L	D	N	V	L	L	E	T	G	F	D	Y	E	N	G	V	A	V	Q	T	R	T	A	R	Q	T	V	E	I	Q	D	G	K	I	V	A	L	R	E	N	K	L	H	P	D	A	T	L	P	H	Y	D	A	G	G	K	L	M	L	P	T	T	R	D	M	H	I	H	L	D	K	T	F	Y	G	G
Query Conservation
Alig confidence														.	.	.	.	.	.	.																											.
Template Conservation														.	.	.	.	.	.	.																											.
Template Sequence	T	T	F	L	F	R	N	G	A	L	L	D	P	.	.	.	.	.	.	.	D	H	P	D	L	L	Q	G	F	E	I	L	I	E	D	G	F	I	R	E	V	S	D	K	P	I	.	K	S	S	N	A	H	V	I	D	V	K	G	K	T	I	M	P	G	L	I	D	L	H	V	H	V	V	A	I	E	F	N	L
Template Known Secondary structure							S	S					T	.	.	.	.	.	.	.	T							S							T	T							S	S			.				S	S						T	T														T	T			S	S
Template Predicted Secondary structure														.	.	.	.	.	.	.																											.
Template SS confidence
	2	.	.	.	.	.	.	.	10	.	.	.	.								.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40		.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.

	132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160						.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.
Query SS confidence																														.	.	.	.	.
Query Sequence	P	W	R	S	L	N	R	P	A	G	T	T	I	Q	D	M	I	K	L	E	Q	K	M	L	P	E	L	Q	P	.	.	.	.	.	Y	T	Q	E	R	A	E	K	L	I	D	L	L	Q	S	K	G	T	T	I	A	R	S	H	C	N	I	E	P	V	S	G	L	K	N	L	Q	N	L	Q	A	V	L	A	R	R
Query Conservation																														.	.	.	.	.
Alig confidence																														.	.	.	.	.
Template Conservation
Template Sequence	P	R	V	A	T	L	P	N	V	L	V	T	L	R	A	V	P	I	M	R	A	M	L	R	R	G	F	T	T	V	R	D	A	G	G	A	G	Y	P	F	K	Q	A	V	E	S	G	L	V	E	G	P	R	L	F	V	S	G	R	A	L	S	Q	T	G	G	H	A	D	P	R	A	R	S	D	Y	M	P	P	D
Template Known Secondary structure				T	T	S																			T	T								S	S											T	T	S	S										S					T	T	S	T	T						S	S	S				S
Template Predicted Secondary structure
Template SS confidence
	74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.

	207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.								.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																								.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.
Query Sequence	Q	A	G	F	E	C	E	I	V	A	F	P	Q	H	G	L	L	L	S	K	S	E	P	L	M	R	E	A	M	Q	A	G	A	H	Y	V	G	G	L	.	.	.	.	.	.	.	D	P	T	S	V	D	G	A	M	E	K	S	L	D	T	M	F	Q	I	A	L	D	Y	D	K	G	V	D	I	H	L	H	E	T
Query Conservation																																								.	.	.	.	.	.	.
Alig confidence																																								.	.	.	.	.	.	.
Template Conservation
Template Sequence	S	P	G	C	C	V	R	V	G	A	L	G	R	V	A	D	G	V	D	E	V	R	R	A	V	R	E	E	L	Q	M	G	A	D	Q	I	K	I	M	A	S	G	G	V	P	T	D	P	V	G	V	F	G	Y	S	E	D	E	I	R	A	I	V	A	E	A	Q	G	R	G	T	Y	V	L	A	H	A	Y	T	P
Template Known Secondary structure					S			T	T								S														T	T		S	S						B								S	S	S	B		S															T	T									S
Template Predicted Secondary structure
Template SS confidence
	154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.

	280	.	.	.	.	.	.	.														.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	T	P	A	G	V	A	A	I	.	.	.	.	.	.	.	.	.	.	.	.	.	N	Y	M	V	E	T	V	E	K	T	P	Q	L	K	G	K	L	T	I	S	H	A	F	A	L	A	T	L	N	E	Q	Q	V	D	E	L	A	N	R	M	V	V	Q	Q	I	S	I	A	S	T	V	P	I	G	T	L	H	M	P
Query Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.	.	.	.
Template Sequence	A	A	I	A	R	A	V	R	C	G	V	R	T	I	E	H	G	N	L	I	D	D	E	T	A	R	L	V	A	E	H	G	.	.	.	.	.	.	.	.	A	Y	V	V	P	T	L	V	T	Y	D	A	L	A	S	E	G	E	K	Y	G	L	P	P	E	S	I	A	K	I	A	D	V	H	G	A	G	L	H	S
Template Known Secondary structure									T	T		S						T	T												T	T	.	.	.	.	.	.	.	.																S	T	G	G	G	T			T	T	S	S	T	T						T	T
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.
Template SS confidence
	237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.									.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.

	347	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.		.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.
Predicted Secondary structure																																																															.
Query SS confidence																																																															.
Query Sequence	L	K	Q	L	H	D	K	G	V	K	V	M	T	G	T	D	S	V	I	D	H	W	S	P	Y	G	L	G	D	M	L	E	K	A	N	L	Y	A	Q	L	Y	I	R	P	N	E	Q	N	L	S	R	S	L	F	L	A	T	G	D	V	L	P	.	L	N	E	K	G	E	R	V	W	P	K	A	Q	D	D	A	S
Query Conservation																																																															.
Alig confidence																																	.	.	.	.	.	.	.	.	.	.	.																				.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	I	E	I	M	K	R	A	G	V	K	M	G	F	G	T	D	L	L	G	E	A	Q	R	L	Q	S	D	E	F	R	I	L	.	.	.	.	.	.	.	.	.	.	.	A	E	V	L	S	P	A	E	V	I	A	S	A	T	I	V	S	A	E	V	L	G	M	Q	D	K	L	G	R	I	V	P	G	A	H	A	D
Template Known Secondary structure							T	T											G	G	G	G	G	G	T	T							.	.	.	.	.	.	.	.	.	.	.	T	T	T	S									T	T							T	T		B	T	T	B	S	S			T	T	S	B
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340												.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.

	426	.	.	.	430	.	.	.	.	.	.	.				.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.
Predicted Secondary structure													.	.	.
Query SS confidence													.	.	.
Query Sequence	F	V	L	V	D	A	S	C	S	A	E	A	.	.	.	V	A	R	I	S	P	R	T	A	T	F	H	K	G	Q	L	V	W
Query Conservation													.	.	.
Alig confidence													.	.	.
Template Conservation
Template Sequence	V	L	V	V	D	G	N	P	L	K	S	V	D	C	L	L	G	Q	G	E	H	I	P	L	V	M	K	D	G	R	L	F	V
Template Known Secondary structure					S	S		T	T	T		G	G	G	S		S	S	S	T	T							T	T
Template Predicted Secondary structure
Template SS confidence
	378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410

Download:

Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions