Job Description P77554 Confidence 99.96% Date Thu Jan 5 12:30:31 GMT 2012 Rank 56 Aligned Residues 351 % Identity 12% Template c2ogjB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:dihydroorotase; PDBTitle: crystal structure of a dihydroorotase Resolution 2.62 Å

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		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.		.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
Predicted Secondary structure																																			.
Query SS confidence																																			.
Query Sequence		H	Y	Y	L	D	N	V	L	L	E	T	G	F	D	Y	E	N	G	V	A	V	Q	T	R	T	A	R	Q	T	V	E	I	Q	.	D	G	K	I	V	A	L	R	E	N	K	L	H	P	D	A	T	L	P	H	Y	D	A	G	G	K	L	M	L	P	T	T	R	D	M	H	I	H	L	D	K	T	F	Y	G	G
Query Conservation																																			.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.											.																.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.																											.	.	.
Template Sequence		P	I	L	L	T	N	V	K	P	V	G	F	.	.	.	.	.	.	.	.	.	.	.	S	Q	S	S	T	D	I	L	I	G	G	D	G	K	I	A	A	V	G	S	A	L	Q	A	P	A	.	.	.	D	T	Q	R	I	D	A	A	F	I	S	P	G	W	V	D	L	H	V	H	I	W	H	G	G	T	D	I
Template Known Secondary structure														.	.	.	.	.	.	.	.	.	.	.				S							T	T	S	B						S	S				S	S	.	.	.	S																						T	T	T	S	S	S
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.																											.	.	.
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.												.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.				.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	W	R	S	L	N	R	P	A	G	T	T	I	Q	D	M	I	K	L	E	Q	K	M	L	P	E	L	Q	P	Y	T	Q	E	R	A	E	K	L	I	D	L	L	Q	S	K	G	T	T	I	A	R	S	H	C	N	I	E	P	V	S	G	L	K	N	L	Q	N	L	Q	A	V	L	A	R	R	Q	A	G	F	E
Query Conservation
Alig confidence																															.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																															.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	I	R	P	S	E	C	G	A	E	R	G	V	T	T	L	V	D	A	G	S	A	G	E	A	N	F	H	G	.	.	.	.	.	.	.	.	F	R	E	Y	I	I	E	P	S	R	E	R	I	K	A	F	L	N	L	G	S	I	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	V	A	C
Template Known Secondary structure					G	G	G	S	S	G	G	G	T												G	G	G	S	T	T	.	.	.	.	.	.	.	.					T	T	T	T		S	S								S	S	T	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T	T
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.									.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.																	140	.	.	.
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	E	I	V	A	F	P	Q	H	G	L	L	L	S	K	S	E	P	L	M	R	E	A	M	Q	A	G	A	H	Y	V	G	G	L	D	P	T	S	V	D	G	A	M	E	K	S	L	D	T	M	F	Q	I	A	L	D	Y	D	K	G	V	D	I	H	L	H	E	T	T	P	A	G	V	A	A	I	N	Y	M	V
Query Conservation
Alig confidence																																																																															.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		N	R	V	P	E	L	R	D	I	K	D	I	D	L	D	R	I	L	E	C	Y	A	E	N	S	E	H	I	V	G	L	V	R	A	S	H	V	I	T	G	S	W	G	V	T	P	V	K	L	G	K	K	I	A	K	I	L	K	V	P	X	X	V	H	V	G	E	P	P	A	L	Y	D	E	V	L	E	.	.	.
Template Known Secondary structure		T	T	S		S		S	S	G	G	G												T	T	T	T	T								S					T	T			S														T									S	T	T	S								.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310					.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.
Query SS confidence																					.	.	.	.
Query Sequence		E	T	V	E	K	T	P	Q	L	K	G	K	L	T	I	S	H	A	F	.	.	.	.	A	L	A	T	L	N	E	Q	Q	V	D	E	L	A	N	R	M	V	V	Q	Q	I	S	I	A	S	T	V	P	I	G	T	L	H	M	P	L	K	Q	L	H	D	K	G	V	K	V	M	T	G	T	D	S	V	I	D	H
Query Conservation																					.	.	.	.
Alig confidence		.	.	.	.	.	.	.													.	.	.	.
Template Conservation		.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	I	L	G	P	G	D	V	V	T	H	C	F	N	G	K	S	G	S	S	I	X	E	D	E	D	L	F	N	L	A	E	R	C	E	G	I	R	L	D	I	G	H	G	G	A	S	F	S	F	K	V	A	E	A	A	I	A	R	G	L	L	P	F	S	I	S	T	D	L	H	G	H	S
Template Known Secondary structure		.	.	.	.	.	.	.				T	T					S	T	B				T	T	T		S	S	S																					S	S	S	S	B											T	T				S						B	S
Template Predicted Secondary structure		.	.	.	.	.	.	.
Template SS confidence
									222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
		368	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.
Predicted Secondary structure																																																																								.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																								.	.	.	.	.	.	.	.	.	.
Query Sequence		W	S	P	Y	G	L	G	D	M	L	E	K	A	N	L	Y	A	Q	L	Y	I	R	P	N	E	Q	N	L	S	R	S	L	F	L	A	T	G	D	V	L	P	L	N	E	K	G	E	R	V	W	P	K	A	Q	D	D	A	S	F	V	L	V	D	A	S	C	S	A	E	A	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																								.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.																		.	.	.	.																																														.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.																		.	.	.	.
Template Sequence		X	N	.	.	F	P	V	W	D	L	A	T	T	X	S	K	L	L	S	V	D	.	.	.	.	X	P	F	E	N	V	V	E	A	V	T	R	N	P	A	S	V	I	R	L	D	X	E	N	R	L	D	V	G	Q	R	A	D	F	T	V	F	D	L	V	D	A	D	L	E	A	T	D	S	N	G	D	V	S	R
Template Known Secondary structure			T	.	.	T	T														T	T	.	.	.	.									T	T	T							T	T				T	T	T	T	S	T	T	S	B																		T	T	S
Template Predicted Secondary structure				.	.																		.	.	.	.
Template SS confidence
		297	.			.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.					.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
		438	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	R	I	S	P	R	T	A	T	F	H	K	G	Q	L	V	W	G	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	K	R	L	F	E	P	R	Y	A	V	I	G	A	E	A	I	A	A	S
Template Known Secondary structure														T	T
Template Predicted Secondary structure
Template SS confidence
		371	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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