Job Description P77554 Confidence 100.00% Date Thu Jan 5 12:30:31 GMT 2012 Rank 37 Aligned Residues 395 % Identity 16% Template c1rjqA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:d-aminoacylase; PDBTitle: the crystal structure of the d-aminoacylase mutant d366a Resolution 1.80 Å

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		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																															.	.	.
Query SS confidence																																																																															.	.	.
Query Sequence		H	Y	Y	L	D	N	V	L	L	E	T	G	F	D	Y	E	N	G	V	A	V	Q	T	R	T	A	R	Q	T	V	E	I	Q	D	G	K	I	V	A	L	R	E	N	K	L	H	P	D	A	T	L	P	H	Y	D	A	G	G	K	L	M	L	P	T	T	R	D	M	H	I	H	L	D	K	T	F	Y	.	.	.
Query Conservation																																																																															.	.	.
Alig confidence														.	.	.	.	.	.	.	.																									.	.																																.	.	.
Template Conservation														.	.	.	.	.	.	.	.																									.	.
Template Sequence		D	Y	I	L	S	G	G	T	V	I	D	G	.	.	.	.	.	.	.	.	T	N	A	P	G	R	L	A	D	V	G	V	R	G	D	R	I	A	A	V	G	D	L	S	.	.	A	S	S	A	R	R	R	I	D	V	A	G	K	V	V	S	P	G	F	I	D	S	H	T	H	D	D	N	Y	L	L	K	H	R
Template Known Secondary structure		S					S	S					S	.	.	.	.	.	.	.	.	S	S												T	T									T	.	.	T	S		B	S						T	T										S	S				T	T						T
Template Predicted Secondary structure														.	.	.	.	.	.	.	.																									.	.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20									.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.			.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
																	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180													.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																				.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																				.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	P	W	R	S	L	N	R	P	A	G	T	T	I	Q	D	M	I	K	L	E	Q	K	M	L	P	E	L	Q	P	Y	T	Q	E	R	A	E	K	L	I	D	L	L	Q	S	K	G	T	T	I	.	.	.	.	.	.	.	.	.	.	.	.	A	R
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																				.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																				.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	M	T	P	K	I	S	Q	G	V	T	T	V	V	T	G	N	C	G	I	S	L	A	P	L	A	H	A	N	P	P	A	P	L	D	L	L	D	E	G	G	S	F	R	F	A	R	F	S	D	Y	L	E	A	L	R	A	A	P	P	A	V	N	A	A	C	M	V	G	H	S	T	L	R	A	A	V	M	P	D
Template Known Secondary structure		T						T	T	T							S		T	T			S		S				S	S			T	T	G	G	G	G		S	S	S					S	S											S			S	S																	S
Template Predicted Secondary structure
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	H	C	N	I	E	P	V	S	G	L	K	N	L	Q	N	L	Q	A	V	L	A	R	R	Q	A	G	F	E	C	E	I	V	A	F	P	Q	H	G	L	L	L	S	K	S	E	P	L	M	R	E	A	M	Q	A	G	A	H	Y	V	G	G	L	D	P	T	S	V	D	G	A	M	E	K	S	L	D	T	M	F
Query Conservation
Alig confidence																																																																	.	.
Template Conservation																																																																	.	.
Template Sequence		L	R	R	E	A	T	A	D	E	I	Q	A	M	Q	A	L	A	D	D	A	L	A	S	G	A	I	G	I	S	T	G	A	F	Y	P	P	A	A	H	A	S	T	E	E	I	I	E	V	C	R	P	L	I	T	H	G	G	V	Y	A	T	H	M	.	.	R	D	E	G	E	H	I	V	Q	A	L	E	E	T	F
Template Known Secondary structure			S	S																					T								T	T	S	G	G	G	T	T											T						T								.	.	S		S	S	T	T
Template Predicted Secondary structure																																																																	.	.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.			.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.																										.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	I	A	L	D	Y	D	K	G	V	D	I	H	L	H	E	T	T	P	A	G	V	A	A	I	N	Y	M	V	E	T	V	E	K	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	Q	L	K	G	K	L	T	I	S	H	A	F	A	L	A	T	L	N	E
Query Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	I	G	R	E	L	D	V	P	V	V	I	S	H	H	K	V	M	G	K	L	N	F	G	R	S	K	E	T	L	A	L	I	E	A	A	M	A	S	Q	D	V	S	L	D	A	Y	P	Y	V	A	G	S	T	M	L	K	Q	D	R	V	L	L	A	G	R	T	L	I	T	W	C	K	P	Y	P	E	L	S	G
Template Known Secondary structure								T	S						S					S	G	G	G	T	T	T													T	T	S								S		S										T	T	T	T	S	S								S	S		G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.						.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure																												.	.	.	.	.
Query SS confidence																												.	.	.	.	.
Query Sequence		Q	Q	V	D	E	L	A	N	R	M	V	V	Q	Q	I	S	I	A	S	T	V	P	I	G	T	L	.	.	.	.	.	H	M	P	L	K	Q	L	H	D	K	G	V	K	V	M	T	G	T	D	S	V	I	D	H	W	S	P	Y	G	L	G	D	M	L	E	K	A	N	L	Y	A	Q	L	Y	I	R	P	N	E
Query Conservation																												.	.	.	.	.
Alig confidence																												.	.	.	.	.																													.
Template Conservation																																																													.
Template Sequence		R	D	L	E	E	I	A	A	E	R	G	K	S	K	Y	D	V	V	P	E	L	Q	P	A	G	A	I	Y	F	M	M	D	E	P	D	V	Q	R	I	L	A	F	G	P	T	M	I	G	S	A	G	L	P	H	D	E	R	P	H	.	P	R	L	W	G	T	F	P	R	V	L	G	H	Y	S	R	D	L	G	L
Template Known Secondary structure			B								T	T	S											S																			S	T	T									T	T		S	S			.	T																	T		S
Template Predicted Secondary structure																																																													.
Template SS confidence
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.		.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
		393	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.							.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.			.	.	.	.	460
Predicted Secondary structure																																															.	.	.	.	.	.																			.	.
Query SS confidence																																															.	.	.	.	.	.																			.	.
Query Sequence		Q	N	L	S	R	S	L	F	L	A	T	G	D	V	L	P	L	N	E	K	G	E	R	V	W	P	K	A	Q	D	D	A	S	F	V	L	V	D	A	S	C	S	A	E	A	.	.	.	.	.	.	V	A	R	I	S	P	R	T	A	T	F	H	K	G	Q	L	V	W	.	.	G	S	V	A	G
Query Conservation																																															.	.	.	.	.	.																			.	.
Alig confidence																																															.	.	.	.	.	.																			.	.
Template Conservation
Template Sequence		F	P	L	E	T	A	V	W	K	M	T	G	L	T	A	A	K	F	G	L	A	E	R	G	Q	V	Q	P	G	Y	Y	A	D	L	V	V	F	D	P	A	T	V	A	D	S	A	T	F	E	H	P	T	E	R	A	A	G	I	H	S	V	Y	V	N	G	A	A	V	W	E	D	Q	S	F	T	G
Template Known Secondary structure		S								T	T	T							T	T		T	T		S	S			T	T	S	B								T	T	T		B					S	S	S	T	T				B	S							T	T						T	T				S
Template Predicted Secondary structure
Template SS confidence
		396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.