Job Description P77554 Confidence 100.00% Date Thu Jan 5 12:30:31 GMT 2012 Rank 7 Aligned Residues 368 % Identity 18% Template c1p1mA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein tm0936; PDBTitle: structure of thermotoga maritima amidohydrolase tm09362 bound to ni and methionine Resolution 1.50 Å

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		55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	L	D	N	V	L	L	E	T	G	F	D	Y	E	N	G	V	A	V	Q	T	R	T	A	R	Q	T	V	E	I	Q	D	G	K	I	V	A	L	R	E	N	K	L	H	P	D	A	T	L	P	H	Y	D	A	G	G	K	L	M	L	P	T	T	R	D	M	H	I	H	L	D	K	T	F	Y	G	G	P	W	R
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.																							.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.																							.	.	.	.	.
Template Sequence		I	I	G	N	C	L	I	L	K	D	.	.	.	.	.	.	.	.	F	S	S	E	P	F	W	G	A	V	E	I	E	N	G	T	I	K	R	V	L	Q	.	.	.	.	.	G	E	V	K	V	D	L	D	L	S	G	K	L	V	M	P	A	L	F	N	T	H	T	H	A	P	M	T	L	L	R	G	V	A	E
Template Known Secondary structure											S	.	.	.	.	.	.	.	.	T	T	S											T	T								.	.	.	.	.	S	S				S				T	T														G	G	G	G	G	G	T	T	S	S
Template Predicted Secondary structure												.	.	.	.	.	.	.	.																							.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.									.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.						.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	N	R	P	A	G	T	T	I	Q	D	M	I	K	L	E	Q	K	M	L	P	E	L	Q	P	Y	T	Q	E	R	A	E	K	L	I	D	L	L	Q	S	K	G	T	T	I	A	R	S	H	C	N	I	E	P	V	S	G	L	K	N	L	Q	N	L	Q	A	V	L	A	R	R	Q	A	G	F	E	C	E	I
Query Conservation
Alig confidence									.	.	.	.																																											.	.	.	.	.
Template Conservation									.	.	.	.																																											.	.	.	.	.
Template Sequence		D	L	S	F	E	E	W	.	.	.	.	L	F	S	K	V	L	P	I	E	D	R	L	T	E	K	M	A	Y	Y	G	T	I	L	A	Q	M	E	M	A	R	H	G	I	A	G	F	V	D	M	Y	F	H	.	.	.	.	.	E	E	W	I	A	K	A	V	R	D	F	G	M	R	A	L	L	T	R	G	L	V
Template Known Secondary structure		S							.	.	.	.			T	T						T	T																			T	T	T									S	S	.	.	.	.	.
Template Predicted Secondary structure									.	.	.	.																																											.	.	.	.	.
Template SS confidence
		69	70	.	.	.	.	.					.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.						.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	F	P	Q	H	G	L	L	L	S	K	S	E	P	L	M	R	E	A	M	Q	A	G	A	H	Y	V	G	G	L	D	P	T	S	V	D	G	A	M	E	K	S	L	D	T	M	F	Q	I	A	L	D	Y	D	K	G	V	D	I	H	L	H	E	T	T	P	A	G	V	A	A	I	N	Y	M	V	E	T	V
Query Conservation
Alig confidence																																																																							.	.	.	.	.
Template Conservation																																																																							.	.	.	.	.
Template Sequence		D	S	N	G	D	D	G	G	R	L	E	E	N	L	K	L	Y	N	E	W	N	G	F	E	G	R	I	F	V	G	F	G	P	H	S	P	Y	L	C	S	E	E	Y	L	K	R	V	F	D	T	A	K	S	L	N	A	P	V	T	I	H	L	Y	E	T	S	K	E	E	.	.	.	.	.	Y	D	L	E	D	I
Template Known Secondary structure			B	T	T	B		T	T													T	T	G	G	G	T										T	T	T	S															T	T								S		S	T	T			.	.	.	.	.			T
Template Predicted Secondary structure																																																																							.	.	.	.	.
Template SS confidence
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.						.	210	.	.	.	.
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	K	T	P	Q	L	K	G	K	L	T	I	S	H	A	F	A	L	A	T	L	N	E	Q	Q	V	D	E	L	A	N	R	M	V	V	Q	Q	I	S	I	A	S	T	V	P	I	G	T	L	H	M	P	L	K	Q	L	H	D	K	G	V	K	V	M	T	G	T	D	S	V	I	D	H	W	S	P	Y	G	L	G
Query Conservation
Alig confidence																					.	.	.																																																	.	.
Template Conservation																					.	.	.																																																	.	.
Template Sequence		L	N	I	G	L	K	E	V	K	T	I	A	A	H	C	V	H	L	P	.	.	.	E	R	Y	F	G	V	L	K	D	I	P	F	F	V	S	H	N	P	A	S	N	L	K	L	G	N	G	I	A	P	V	Q	R	M	I	E	H	G	M	K	V	T	L	G	T	D	G	A	.	.	A	S	N	N	S	L	N	L
Template Known Secondary structure			T	T	T	T	T	T	S								T	T			.	.	.	G	G	G	T	T	T	T	T	T	S	S													T	T												T	T										T	.	.	T	T	T	S
Template Predicted Secondary structure																					.	.	.																																																	.	.
Template SS confidence
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.				.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.			.	.	.	.	.	.	.	.
		375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.					.	.	.	.	.							.	440	.	.	.	.
Predicted Secondary structure																																																													.	.	.	.						.	.	.	.	.	.
Query SS confidence																																																													.	.	.	.						.	.	.	.	.	.
Query Sequence		D	M	L	E	K	A	N	L	Y	A	Q	L	Y	I	R	P	N	E	Q	N	L	S	R	S	L	F	L	A	T	G	D	V	L	P	L	N	E	K	G	E	R	V	W	P	K	A	Q	D	D	A	S	F	V	L	V	D	A	S	C	.	.	.	.	S	A	E	A	V	.	.	.	.	.	.	A	R	I	S	P	R
Query Conservation																																																													.	.	.	.						.	.	.	.	.	.
Alig confidence																																										.																			.	.	.	.						.	.	.	.	.	.
Template Conservation																																										.
Template Sequence		F	F	E	M	R	L	A	S	L	L	Q	K	A	Q	N	P	R	N	L	D	V	N	T	C	L	K	M	V	T	Y	D	G	A	Q	A	M	G	F	K	S	.	G	K	I	E	E	G	W	N	A	D	L	V	V	I	D	L	D	L	P	E	M	F	P	V	Q	N	I	K	N	H	L	V	H	A	F	S	G	E	V
Template Known Secondary structure														T	T		T	T	S	S										T								T		S		.	S	S			T	T	S	B										S	G	G	G		S	G	G	G								T			S
Template Predicted Secondary structure																																										.
Template SS confidence
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
		445	.	.	.	.	450	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	T	F	H	K	G	Q	L	V	W
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	A	T	M	V	A	G	K	W	I	Y
Template Known Secondary structure		S					T	T
Template Predicted Secondary structure
Template SS confidence
		369	370	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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