Job Description P77554 Confidence 100.00% Date Thu Jan 5 12:30:31 GMT 2012 Rank 14 Aligned Residues 384 % Identity 12% Template c1gkpD_ PDB info PDB header:hydrolase Chain: D: PDB Molecule:hydantoinase; PDBTitle: d-hydantoinase (dihydropyrimidinase) from thermus sp. in2 space group c2221 Resolution 1.29 Å

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		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	Y	Y	L	D	N	V	L	L	E	T	G	F	D	Y	E	N	G	V	A	V	Q	T	R	T	A	R	Q	T	V	E	I	Q	D	G	K	I	V	A	L	R	E	N	K	L	H	P	D	A	T	L	P	H	Y	D	A	G	G	K	L	M	L	P	T	T	R	D	M	H	I	H	L	D	K	T	F	Y	G	G	P
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.	.	.																								.
Template Conservation														.	.	.	.	.	.	.	.	.	.																								.
Template Sequence		P	L	L	I	K	N	G	E	I	I	T	A	.	.	.	.	.	.	.	.	.	.	D	S	R	Y	K	A	D	I	Y	A	E	G	E	T	I	T	R	I	G	Q	N	L	E	.	A	P	P	G	T	E	V	I	D	A	T	G	K	Y	V	F	P	G	F	I	D	P	H	V	H	I	Y	L	P	F	M	A	T	F
Template Known Secondary structure													T	.	.	.	.	.	.	.	.	.	.	T										S	S	S	B						S	S			.			T	T							T	T	S													S	S				T	T
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.																								.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.											.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	R	S	L	N	R	P	A	G	T	T	I	Q	D	M	I	K	L	E	Q	K	M	L	P	E	L	Q	P	Y	T	Q	E	R	A	E	K	L	I	D	L	L	Q	S	K	G	T	T	I	A	R	S	H	C	N	I	E	P	V	S	G	L	K	N	L	Q	N	L	Q	A	V	L	A	R	R	Q	A	G	F	E	C
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	K	D	T	H	E	T	G	S	K	A	A	L	M	G	G	T	T	T	Y	I	E	M	C	C	P	S	R	N	D	D	A	L	E	G	Y	Q	L	W	K	S	K	A	E	G	N	S	Y	C	D	Y	T	F	H	M	A	V	S	K	F	D	E	K	T	E	G	Q	L	R	E	I	V	A	D	G	I	S	S	F	I
Template Known Secondary structure			S													T	T												T	T	S														T	T	T		S	S												S													T	T			B
Template Predicted Secondary structure
Template SS confidence
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.																									.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	I	V	A	F	P	Q	H	G	L	L	L	S	K	S	E	P	L	M	R	E	A	M	Q	A	G	A	H	Y	V	G	G	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	P	T	S	V	D	G	A	M	E	K	S	L	D	T	M	F	Q	I	A	L	D	Y
Query Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	L	S	Y	K	N	F	F	G	V	D	D	G	E	M	Y	Q	T	L	R	L	A	K	E	L	G	V	I	V	T	A	H	C	E	N	A	E	L	V	G	R	L	Q	Q	K	L	L	S	E	G	K	T	G	P	E	W	H	E	P	S	R	P	E	A	V	E	A	E	G	T	A	R	F	A	T	F	L	E	T	T
Template Known Secondary structure				S	S	T	T	T	T	B																	T		B						S															T	T			S	G	G	G	T	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	K	G	V	D	I	H	L	H	E	T	T	P	A	G	V	A	A	I	N	Y	M	V	E	T	V	E	K	T	P	Q	L	K	G	K	L	T	I	S	H	A	F	A	L	A	T	L	N	E	Q	Q	V	D	E	L	A	N	R	M	V	V	Q	Q	I	S	I	A	S	T	V	P	I	G	T	L	H	M	P	L	K
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.																																																.	.
Template Conservation													.	.	.	.	.	.	.	.																																																.	.
Template Sequence		G	A	T	G	Y	V	V	H	L	S	C	.	.	.	.	.	.	.	.	K	P	A	L	D	A	A	M	A	A	K	A	R	G	V	P	I	Y	I	E	S	V	I	P	H	F	L	L	D	K	T	Y	A	E	R	G	G	V	E	A	M	K	Y	I	M	S	P	.	.	P	L	R	D	K	R	N	Q	K	V	L	W
Template Known Secondary structure		T							S			S	.	.	.	.	.	.	.	.													T	T																G	G	G	G	G	S							T	T			S	S	.	.					T
Template Predicted Secondary structure													.	.	.	.	.	.	.	.																																																.	.
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.									.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.			290	.	.	.	.	.	.	.	.	.	300	.
		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.													.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.		.	410	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.																																											.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.	.																																											.
Query Sequence		Q	L	H	D	K	G	V	K	V	M	T	G	T	D	S	V	I	D	.	.	.	.	.	.	.	.	.	.	.	.	H	W	S	P	Y	G	L	G	D	M	L	E	K	A	N	L	Y	A	Q	L	Y	I	R	P	N	E	Q	N	L	S	R	S	L	F	L	A	T	G	D	V	L	P	.	L	N	E	K	G	E	R
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.	.																																											.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.																																											.
Template Conservation
Template Sequence		D	A	L	A	Q	G	F	I	D	T	V	G	T	D	H	C	P	F	D	T	E	Q	K	L	L	G	K	E	A	F	T	A	I	P	N	G	I	P	A	I	E	D	R	V	N	L	L	Y	T	Y	G	V	S	R	G	R	L	D	I	H	R	F	V	D	A	A	S	T	K	A	A	K	L	F	G	L	F	P	R	K
Template Known Secondary structure						T	T	S	S							B									G	G	G	S	S		G	G	G	S				B			T	T	T									T	T	T	S	S	S											T							T	T		T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
		416	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.																	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	W	P	K	A	Q	D	D	A	S	F	V	L	V	D	A	S	C	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	E	A	V	A	R	I	S	P	R	T	A	T	F	H	K	G	Q	L	V	W	G	S
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	T	I	A	V	G	S	D	A	D	L	V	V	Y	D	P	Q	Y	R	G	T	I	S	V	K	T	Q	H	V	N	N	D	Y	N	G	F	E	G	F	E	I	D	G	R	P	S	V	V	T	V	R	G	K	V	A	V	R	D
Template Known Secondary structure		S	S		S	T	T	S	B								T	T							G	G	G			S	S	S	S			T	T	T	T				S									T	T						T
Template Predicted Secondary structure
Template SS confidence
		382	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.