Job Description P77554 Confidence 100.00% Date Thu Jan 5 12:30:31 GMT 2012 Rank 45 Aligned Residues 354 % Identity 19% Template c1e9yB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:urease subunit beta; PDBTitle: crystal structure of helicobacter pylori urease in complex with2 acetohydroxamic acid Resolution 3.00 Å

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		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.												.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																						.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	N	T	M	K	I	T	D	P	H	Y	Y	L	D	N	V	L	L	E	T	G	F	D	Y	E	N	G	V	A	V	Q	T	R	T	A	R	Q	T	V	E	I	Q	D	G	K	I	V	A	L	R	E	N	.	.	.	.	.	.	.	.	.	.	.	K	L	H	P	D	A	T	L	P	H	Y	D	A	G	G	K	L
Query Conservation																																																						.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.	.
Template Sequence		S	N	N	P	S	K	E	E	L	D	L	I	I	T	N	A	L	I	V	D	Y	.	.	.	.	.	.	.	.	.	.	T	G	I	Y	K	A	D	I	G	I	K	D	G	K	I	A	G	I	G	K	G	G	N	K	D	M	Q	D	G	V	K	N	N	L	S	V	G	P	A	T	E	A	L	A	G	E	G	L	I
Template Known Secondary structure			S	S			T	T			S											T	.	.	.	.	.	.	.	.	.	.	T											T	T									B		T	T	T	S	S	S			G	G	G	B			T	T							T	T
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.
Template SS confidence
		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.											.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.		.	.	.	.	190	.
Predicted Secondary structure																																																																											.
Query SS confidence																																																																											.
Query Sequence		M	L	P	T	T	R	D	M	H	I	H	L	D	K	T	F	Y	G	G	P	W	R	S	L	N	R	P	A	G	T	T	I	Q	D	M	I	K	L	E	Q	K	M	L	P	E	L	Q	P	Y	T	Q	E	R	A	E	K	L	I	D	L	L	Q	S	K	G	T	T	I	A	R	S	H	C	.	N	I	E	P	V	S
Query Conservation																																																																											.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	T	A	G	G	I	D	T	H	I	H	F	I	S	P	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	I	P	T	A	F	A	S	G	V	T	T	M	I	G	G	G	T	G	P	A	D	G	T
Template Known Secondary structure													T	T		T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								T	T										S	S
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.																																									.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	K	N	L	Q	N	L	Q	A	V	L	A	R	R	Q	A	G	F	E	C	E	I	V	A	F	P	Q	H	G	L	L	L	S	K	S	E	P	L	M	R	E	A	M	Q	A	G	A	H	Y	V	G	G	L	D	P	T	S	V	D	G	A	M	E	K	S	L	D	T	M	F	Q	I	A	L	D	Y	D	K	G
Query Conservation
Alig confidence																																																					.	.	.	.
Template Conservation																																																					.	.	.	.
Template Sequence		N	A	T	T	I	T	P	G	R	R	N	L	K	W	M	L	R	A	A	E	E	Y	S	M	N	L	G	F	L	A	K	G	N	A	S	N	D	A	S	L	A	D	Q	I	E	A	G	A	I	G	F	.	.	.	.	I	H	E	D	W	G	T	T	P	S	A	I	N	H	A	L	D	V	A	D	K	Y	D	V	Q
Template Known Secondary structure																					T	T	S	S	S					B						S											T	T		S	B		.	.	.	.			G	G	G																	T	T		B
Template Predicted Secondary structure																																																					.	.	.	.
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.					.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.																				.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	D	I	H	L	H	E	T	T	P	A	G	V	A	A	I	N	Y	M	V	E	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	E	K	T	P	Q	L	K	G	K	L	T	I	S	H	A	F	A	L	A	T	L	N	E	Q	Q	V	D	E	L	A	N	R	M	V	V	Q	Q	I
Query Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	A	I	H	T	D	T	L	N	E	A	G	C	V	E	D	T	M	A	A	I	A	G	R	T	M	H	T	F	H	T	E	G	A	G	G	G	H	A	P	D	I	I	K	V	A	G	E	H	N	I	L	P	A	S	T	N	P	T	I	P	F	T	V	N	T	E	A	E	H	M	D	M	L	M	V	C	H	H	K
Template Known Secondary structure								T	T		S	S											T	T						T	T	T	T	S	T	T	S		S	T	T	T	G	G	G	G	G	G	S	T	T							G	G	G		S		B	T	T												T	T	T
Template Predicted Secondary structure
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
		333	.	.	.	.	.	.	340	.	.	.									.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.								.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.																																																		.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.	.																																																		.	.	.	.	.	.	.
Query Sequence		S	I	A	S	T	V	P	I	G	T	L	.	.	.	.	.	.	.	.	H	M	P	L	K	Q	L	H	D	K	G	V	K	V	M	T	G	T	D	S	V	I	D	H	W	S	P	Y	G	L	G	D	M	L	E	K	A	N	L	Y	A	Q	L	Y	I	R	P	N	E	.	.	.	.	.	.	.	Q	N	L	S	R
Query Conservation													.	.	.	.	.	.	.	.																																																		.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.																																																		.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	K	S	I	K	E	D	V	Q	F	A	D	S	R	I	R	P	Q	T	I	A	A	E	D	T	L	H	D	M	G	A	F	S	I	T	S	S	D	S	Q	A	M	G	R	V	G	E	V	I	T	R	T	W	Q	T	A	D	K	N	K	K	E	F	G	R	L	K	E	E	K	G	D	N	D	N	F	R	I	K	R
Template Known Secondary structure			S	S																										T	T	S								T	T	S	S			T	T	S																		S		S	S			S	S	S
Template Predicted Secondary structure
Template SS confidence
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
		398	.	400	.	.	.	.	.	.	.	.		.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.
Predicted Secondary structure													.
Query SS confidence													.
Query Sequence		S	L	F	L	A	T	G	D	V	L	P	.	L	N	E	K	G	E	R	V	W	P	K	A	Q	D	D	A	S	F	V	L	V	D	A	S	C	S	A	E	A	V	A	R	I	S	P	R	T	A	T	F	H	K	G	Q	L	V	W	G	S
Query Conservation													.
Alig confidence													.																													.	.	.	.	.	.
Template Conservation																																										.	.	.	.	.	.
Template Sequence		Y	L	S	K	Y	T	I	N	P	A	I	A	H	G	I	S	E	Y	V	G	S	V	E	V	G	K	V	A	D	L	V	L	W	S	P	A	F	F	G	V	.	.	.	.	.	.	K	P	N	M	I	I	K	G	G	F	I	A	L	S	Q
Template Known Secondary structure				G	G	G	T							T	T		T	T	T	S	S	S	S		T	T	S	B								T	T	T	T	T	T	.	.	.	.	.	.			S					T	T
Template Predicted Secondary structure																																										.	.	.	.	.	.
Template SS confidence
		405	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.							.	.	.	.	.	450	.	.	.	.	.	.	.	.	.