Job Description P37794 Confidence 86.52% Date Thu Jan 5 11:57:42 GMT 2012 Rank 15 Aligned Residues 195 % Identity 16% Template c3qbuD_ PDB info PDB header:hydrolase Chain: D: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of putative peptidoglyacn deactelyase (hp0310) from2 helicobacter pylori Resolution 2.57 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.			.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure																																			.	.
Query SS confidence																																			.	.
Query Sequence		D	F	G	L	S	K	G	Q	N	Y	G	I	I	E	A	C	R	N	G	I	V	T	S	T	T	A	L	V	N	G	Q	A	I	.	.	D	H	A	V	Q	L	S	R	D	E	P	S	L	A	I	G	M	H	F	V	L	T	M	G	K	P	L	T	A	M	P	G	L	T	R	D	G	V	L	G	K	W	I	W	Q
Query Conservation																																			.	.
Alig confidence												.																							.	.											.								.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.																																			.								.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	F	A	G	E	V	G	I	P	R	.	L	L	K	L	F	K	K	Y	H	L	P	A	T	W	F	V	P	G	H	S	I	E	T	F	P	E	Q	M	K	M	I	V	D	A	.	G	H	E	V	G	A	H	.	G	Y	S	H	E	N	P	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							T					.								T	T																								T	T	.	T					B		.		S	S				G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure												.																																			.								.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		36	.	.	.	40	.	.	.	.	.		.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.		80	.	.	.	.	.	.		.	.	.	90	.	.	.	.
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	E	E	D	A	L	P	L	E	E	I	T	Q	E	L	V	S	Q	Y	L	R	F	I	E	L	F	G	R	K	P	T	H	L	D	S	H	H	H	V	H	M	F	P	Q	I	F	P	I	V	A	R	F	A	A	E	Q	G	I	A	L	R	A	D	R	Q	M	A	F	D	L	P	V	N	L	R	T	T	Q	G
Query Conservation
Alig confidence		.	.	.	.	.																																						.	.	.	.	.
Template Conservation		.	.	.	.	.																																						.	.	.	.	.
Template Sequence		.	.	.	.	.	A	M	S	T	K	Q	E	E	D	V	L	L	K	S	V	E	L	I	K	D	L	T	G	K	A	P	T	G	Y	V	A	P	W	W	E	F	S	.	.	.	.	.	N	I	T	N	E	L	L	L	K	H	G	F	K	Y	D	H	S	L	M	H	N	D	F	T	P	Y	Y	V	R	V	G	D	S
Template Known Secondary structure		.	.	.	.	.	G	S																					S	S								G	G	G			S	.	.	.	.	.	S								T	T	T									S		S	S	S									B
Template Predicted Secondary structure		.	.	.	.	.																																						.	.	.	.	.
Template SS confidence
							95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.						.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		169	170	.	.	.	.	.	.	.	.	.																																																180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.		200
Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Query SS confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Query Sequence		F	S	S	A	F	Y	G	E	E	I	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	S	L	F	L	Q	V	L	D	D	A	G	H	R	G	D	R	S	L	E	.	V
Query Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Template Conservation
Template Sequence		W	S	K	I	D	Y	S	L	E	A	K	D	W	M	K	P	L	I	R	G	V	E	T	N	L	V	E	I	P	A	N	W	Y	L	D	D	L	P	P	M	M	F	I	K	K	S	P	N	S	F	G	F	V	S	P	R	D	I	G	Q	M	W	I	D	Q	F	D	W	V	Y	R	E	M	D	Y	A	V	F	S	M
Template Known Secondary structure							T	T	S		G	G	G	T					B														G	G	G	B	S								T	T		T	T					S																					S
Template Predicted Secondary structure
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.		240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																									.
Query SS confidence																																									.
Query Sequence		M	C	H	P	A	F	I	D	N	T	I	R	Q	S	A	Y	C	F	P	R	L	T	E	L	D	V	L	T	S	A	S	L	K	G	A	I	A	Q	R	.	G	Y	R	L	G	S	Y	R	D	V
Query Conservation																																									.
Alig confidence												.	.	.	.	.	.	.	.								.	.	.	.	.										.
Template Conservation												.	.	.	.	.	.	.	.								.	.	.	.	.
Template Sequence		T	I	H	P	D	V	S	A	R	P	.	.	.	.	.	.	.	.	Q	V	L	L	M	H	E	.	.	.	.	.	K	I	I	E	H	I	N	K	H	E	G	V	R	W	V	T	F	N	E	I
Template Known Secondary structure									T	S		.	.	.	.	.	.	.	.								.	.	.	.	.							T	T	S	T	T
Template Predicted Secondary structure												.	.	.	.	.	.	.	.								.	.	.	.	.
Template SS confidence
		245	.	.	.	.	250	.	.	.	.									.	.	.	.	.	260	.						.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions