Phyre 2 alignment of P00926 with d1ve1a1

Job Description P00926
Confidence 100.00% Date Thu Jan 5 10:57:11 GMT 2012

Rank 25 Aligned Residues 291

% Identity 23% Template d1ve1a1

SCOP info Tryptophan synthase beta subunit-like PLP-dependent enzymes Tryptophan synthase beta subunit-like PLP-dependent enzymes Tryptophan synthase beta subunit-like PLP-dependent enzymes

Resolution 1.45

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	T	A	A	T	G	G	I	I	E	S	E	L	V	A	I	P	A	M	Q	K	R	L	E	K	E	Y	Q	Q	P	I	S	G	Q	L	L	L	K	K	D	S	H	L	P	I	S	G	S	I	K	A	R	G	G	I	Y	E	V	L	A	H	A	E	K	L	A	L	E	A	G	L	L	T	L	D	D	D	Y	S	K	L
Query Conservation
Alig confidence																									.	.	.	.	.	.	.	.												.																										.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.												.																										.	.	.	.	.	.	.	.	.	.	.
Template Sequence	M	R	V	E	G	A	I	G	K	T	P	V	V	R	L	A	K	V	V	E	P	D	M	A	.	.	.	.	.	.	.	.	E	V	W	V	K	L	E	G	L	N	P	.	G	G	S	I	K	D	R	P	A	W	Y	M	I	K	D	A	E	E	R	G	I	L	R	P	G	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			G	G	G	G											S	S	S		T	T	S		.	.	.	.	.	.	.	.							G	G	G	S	T	.	T	S	B	T	T														T	T	S			T	T	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.												.																										.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.									.	.	.	.	.	30	.	.	.	.	.		.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60

	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.			.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure																																																																			.	.
Query SS confidence																																																																			.	.
Query Sequence	L	S	P	E	F	K	Q	F	F	S	Q	Y	S	I	A	V	G	S	T	G	N	L	G	L	S	I	G	I	M	S	A	R	I	G	F	K	V	T	V	H	M	S	A	D	A	R	A	W	K	K	A	K	L	R	S	H	G	V	T	V	V	E	Y	E	Q	D	.	.	Y	G	V	A	V	E	E	G	R	K	A	A
Query Conservation																																																																			.	.
Alig confidence	.	.	.	.	.	.	.	.	.																																																										.	.
Template Conservation	.	.	.	.	.	.	.	.	.
Template Sequence	.	.	.	.	.	.	.	.	.	S	G	Q	V	I	V	E	P	T	S	G	N	T	G	I	G	L	A	M	I	A	A	S	R	G	Y	R	L	I	L	T	M	P	A	Q	M	S	E	E	R	K	R	V	L	K	A	F	G	A	E	L	V	L	T	D	P	E	R	R	M	L	A	A	R	E	E	A	L	R	L	K
Template Known Secondary structure	.	.	.	.	.	.	.	.	.	S							S			S														T									T	T												T	T								T	T	T
Template Predicted Secondary structure	.	.	.	.	.	.	.	.	.
Template SS confidence
										61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.

	228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.		.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure																					.
Query SS confidence																					.
Query Sequence	Q	S	D	P	N	C	F	F	I	D	D	E	N	S	R	T	L	F	L	G	.	Y	S	V	A	G	Q	R	L	K	A	Q	F	A	Q	Q	G	R	I	V	D	A	D	N	P	L	F	V	Y	L	P	C	G	V	G	G	G	P	G	G	V	A	F	G	L	K	L	A	F	G	D	H	V	H	C	F	F	A	E	P
Query Conservation																					.
Alig confidence						.															.																.	.	.	.	.	.	.	.																								.
Template Conservation						.																															.	.	.	.	.	.	.	.																								.
Template Sequence	E	E	L	G	A	.	F	M	P	D	Q	F	K	N	P	A	N	V	R	A	H	Y	E	T	T	G	P	E	L	Y	E	A	L	E	G	R	.	.	.	.	.	.	.	.	I	D	A	F	V	Y	G	S	G	T	G	G	T	I	T	G	V	G	R	Y	L	K	E	.	R	I	P	H	V	K	V	I	A	V	E	P
Template Known Secondary structure				T		.	B				T	T	T											T									T	T	T		.	.	.	.	.	.	.	.		S							S	S	S												T	.	T		T	T
Template Predicted Secondary structure						.																															.	.	.	.	.	.	.	.																								.
Template SS confidence
	132	.	.	.	.		.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.									.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.		190	.	.	.	.	.	.	.	.	.	200	.

	307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	T	H	S	P	C	M	L	L	G	V	H	T	G	L	H	D	Q	I	S	V	Q	D	I	G	I	D	N	L	T	A	A	D	G	L	A	V	G	R	A	S	G	F	V	G	R	A	M	E	R	L	L	D	G	F	Y	T	L	S	D	Q	T	M	Y	D	M	L	G	W	L	A	Q	E	E	G	I	R	L	E	P	S
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	A	R	S	N	V	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	G	G	K	M	G	Q	H	G	F	Q	G	M	G	P	G	F	I	P	E	N	L	D	L	S	L	L	D	G	V	I	Q	V	W	E	E	D	A	F	P	L	A	R	R	L	A	R	E	E	G	L	F	L	G	M	S
Template Known Secondary structure	G	G	G		T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T							S		T	T	S			S	S			T	T			G	G	G		S																									B
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	202	.	.	.	.	.																			.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.

	387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	L	A	G	M	A	G	P	Q	R	V	C	A	S	V	S	Y	Q	Q	M	H	G	F	S	A	E	Q	L	R	N	T	T	H	L	V	W	A	T	G	G	G	M	V
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	S	G	G	I	V	W	A	A	L	Q	V	A	R	.	.	.	.	.	.	.	.	.	.	.	.	E	L	G	P	G	K	R	V	A	C	I	S	P	D	G	G	W	K
Template Known Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.				T	T									B	B	S	G	G
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	264	.	.	.	.	.	270	.	.	.	.	.	.													.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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