Job Description P00926 Confidence 100.00% Date Thu Jan 5 10:57:11 GMT 2012 Rank 35 Aligned Residues 294 % Identity 15% Template d1f2da_ SCOP info Tryptophan synthase beta subunit-like PLP-dependent enzymes Tryptophan synthase beta subunit-like PLP-dependent enzymes Tryptophan synthase beta subunit-like PLP-dependent enzymes Resolution 2.00

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		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.				.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure																																																	.	.	.
Query SS confidence																																																	.	.	.
Query Sequence		A	A	T	G	G	I	I	E	S	E	L	V	A	I	P	A	M	Q	K	R	L	E	K	E	Y	Q	Q	P	I	S	G	Q	L	L	L	K	K	D	S	H	L	P	I	S	G	S	I	.	.	.	K	A	R	G	G	I	Y	E	V	L	A	H	A	E	K	L	A	L	E	A	G	L	L	T	L	D	D	D	Y	S
Query Conservation																																																	.	.	.
Alig confidence																											.	.	.	.	.	.												.					.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.	.	.	.	.	.												.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	Y	P	L	T	F	G	P	S	P	I	S	N	L	N	R	L	S	Q	H	L	G	S	K	V	.	.	.	.	.	.	N	V	Y	A	K	R	E	D	C	N	S	.	G	L	A	F	G	G	N	K	L	R	K	L	E	Y	I	V	P	D	I	V	E	G	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure						S	S	S	S													T	T	T		S	.	.	.	.	.	.							G	G	G	S		.	S	S	T	T									T	T	T							S		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																											.	.	.	.	.	.												.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.							.	.	.	.	.	.	.	40	.	.	.		.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.			.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200												.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure																				.	.																																				.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.																																				.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	L	L	S	P	E	F	K	Q	F	F	S	Q	Y	S	I	A	V	.	.	G	S	T	G	N	L	G	L	S	I	G	I	M	S	A	R	I	G	F	K	V	T	V	H	M	S	A	D	A	R	A	W	K	K	A	.	.	.	.	.	.	.	.	.	.	.	K	L	R	S	H	G	V	T	V	V	E	Y	E	Q
Query Conservation																				.	.																																				.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.							.	.																																				.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	Y	T	H	L	V	S	I	G	G	R	Q	S	N	Q	T	R	M	V	A	A	L	A	A	K	L	G	K	K	C	V	L	I	Q	E	D	W	V	P	I	P	E	A	E	K	D	V	Y	N	R	V	G	N	I	E	L	S	R	I	M	G	A	D	V	R	V	I	E	D
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.		S								T	T															T											S				G	G	G	T	T	T	T	T	T	S									T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
														67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
		215	.	.						.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.			.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.																					.	.
Query SS confidence					.	.	.	.	.																					.	.
Query Sequence		D	Y	G	.	.	.	.	.	V	A	V	E	E	G	R	K	A	A	Q	S	D	P	N	C	F	F	I	D	.	.	D	E	N	S	R	T	L	F	L	G	Y	S	V	A	G	Q	R	L	K	A	Q	F	A	Q	Q	G	R	I	V	D	A	D	N	P	L	F	V	Y	L	P	C	G	V	G	G	G	P	G	G	V
Query Conservation					.	.	.	.	.																					.	.
Alig confidence					.	.	.	.	.																					.	.																											.	.	.	.	.
Template Conservation																																																										.	.	.	.	.
Template Sequence		G	F	D	I	G	M	R	K	S	F	A	N	A	L	Q	E	L	E	D	A	G	H	K	P	Y	P	I	P	A	G	C	S	E	H	K	Y	G	G	L	G	F	V	G	F	A	D	E	V	I	N	Q	E	V	E	L	G	.	.	.	.	.	I	K	F	D	K	I	V	V	C	C	V	T	G	S	T	T	A	G	I
Template Known Secondary structure					S	S															T	T								G	G	G	T	T	S	T	T	T	T	T																	T	.	.	.	.	.				S							S	S	S
Template Predicted Secondary structure																																																										.	.	.	.	.
Template SS confidence
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190						.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	F	G	L	K	L	A	F	G	D	H	V	H	C	F	F	A	E	P	T	H	S	P	C	M	L	L	G	V	H	T	G	L	H	D	Q	I	S	V	Q	D	I	G	I	D	N	L	T	A	A	D	G	L	A	V	G	R	A	S	G	F	V	G	R	A	M	E	R	L	L	D	G	F	Y	T	L	S	D	Q	T
Query Conservation
Alig confidence												.																						.	.	.	.	.	.	.	.	.	.	.	.																	.
Template Conservation												.																						.	.	.	.	.	.	.	.	.	.	.	.																	.
Template Sequence		L	A	G	M	A	Q	Y	G	R	Q	.	D	D	V	I	A	I	D	A	S	F	T	S	E	K	T	K	E	Q	T	L	R	.	.	.	.	.	.	.	.	.	.	.	.	I	A	N	N	T	A	K	L	I	G	V	E	H	E	F	K	.	D	F	T	L	D	T	R	F	A	Y	P	C	Y	G	V	P	N	E	G
Template Known Secondary structure						G	G	G	T		G	.	G	G							S	S												.	.	.	.	.	.	.	.	.	.	.	.										T						S	.							T	T	S	T	T	B	T	T	B
Template Predicted Secondary structure												.																						.	.	.	.	.	.	.	.	.	.	.	.																	.
Template SS confidence
		210	.	.	.	.	.	.	.	.	.		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240													.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.		.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
		368	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.		.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.
Predicted Secondary structure																					.
Query SS confidence																					.
Query Sequence		M	Y	D	M	L	G	W	L	A	Q	E	E	G	I	R	L	E	P	S	.	A	L	A	G	M	A	G	P	Q	R	V	C	A	S	V	S	Y	Q	Q	M	H	G	F	S	A	E	Q	L	R	N	T	T	H	L	V	W	A	T	G	G
Query Conservation																					.
Alig confidence																					.																.	.	.	.	.	.	.	.	.	.
Template Conservation																																					.	.	.	.	.	.	.	.	.	.
Template Sequence		T	I	E	A	I	R	T	C	A	E	Q	E	G	V	L	T	D	P	V	Y	E	G	K	S	M	Q	G	L	I	A	L	I	K	E	D	.	.	.	.	.	.	.	.	.	.	Y	F	K	P	G	A	N	V	L	Y	V	H	L	G	G
Template Known Secondary structure														S					T	T	T														T	T	.	.	.	.	.	.	.	.	.	.		S		T	T
Template Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.
Template SS confidence
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310											.	.	.	.	.	.	.	.	.	320	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions