Job Description P00926 Confidence 100.00% Date Thu Jan 5 10:57:11 GMT 2012 Rank 1 Aligned Residues 433 % Identity 89% Template c3r0zA_ PDB info PDB header:lyase Chain: A: PDB Molecule:d-serine dehydratase; PDBTitle: crystal structure of apo d-serine deaminase from salmonella2 typhimurium Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	E	N	A	K	M	N	S	L	I	A	Q	Y	P	L	V	K	D	L	V	A	L	K	E	T	T	W	F	N	P	G	T	T	S	L	A	E	G	L	P	Y	V	G	L	T	E	Q	D	V	Q	D	A	H	A	R	L	S	R	F	A	P	Y	L	A	K	A	F	P	E	T	A	A	T	G	G	I	I	E	S	E
Query Conservation
Alig confidence					.	.																																																																	.	.	.
Template Conservation					.	.																																																																	.	.	.
Template Sequence		M	E	N	.	.	I	Q	K	L	I	A	R	Y	P	L	V	E	D	L	V	A	L	K	E	T	T	W	F	N	P	G	A	T	S	L	A	Q	G	L	P	Y	V	G	L	T	E	Q	D	V	N	A	A	H	D	R	L	A	R	F	A	P	Y	L	A	K	A	F	P	Q	.	.	.	T	G	G	M	I	E	S	D
Template Known Secondary structure				T	.	.								S	T	T						T	T								T	T								G	G	G	T																									S	T	T	.	.	.
Template Predicted Secondary structure					.	.																																																																	.	.	.
Template SS confidence
		1	.	.			.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.				.	.	70	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	A	I	P	A	M	Q	K	R	L	E	K	E	Y	Q	Q	P	I	S	G	Q	L	L	L	K	K	D	S	H	L	P	I	S	G	S	I	K	A	R	G	G	I	Y	E	V	L	A	H	A	E	K	L	A	L	E	A	G	L	L	T	L	D	D	D	Y	S	K	L	L	S	P	E	F	K	Q	F	F	S	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	V	A	I	P	A	M	Q	K	R	L	E	K	E	Y	G	Q	T	I	N	G	E	M	L	L	K	K	D	S	H	L	A	I	S	G	S	I	K	A	R	G	G	I	Y	E	V	L	T	H	A	E	K	L	A	L	E	A	G	L	L	T	T	D	D	D	Y	S	V	L	L	S	P	E	F	K	Q	F	F	S	Q
Template Known Secondary structure																						S							G	G	G		T	T	T	S	B	T																					T	S			T	T	S		G	G	G	G	G	S								T	T
Template Predicted Secondary structure
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	S	I	A	V	G	S	T	G	N	L	G	L	S	I	G	I	M	S	A	R	I	G	F	K	V	T	V	H	M	S	A	D	A	R	A	W	K	K	A	K	L	R	S	H	G	V	T	V	V	E	Y	E	Q	D	Y	G	V	A	V	E	E	G	R	K	A	A	Q	S	D	P	N	C	F	F	I	D	D	E	N
Query Conservation
Alig confidence																																																																													.	.	.	.
Template Conservation																																																																													.	.	.	.
Template Sequence		Y	S	I	A	V	G	S	T	G	N	L	G	L	S	I	G	I	M	S	A	C	I	G	F	K	V	T	V	H	M	S	A	D	A	R	A	W	K	K	A	K	L	R	S	H	G	V	T	V	V	E	Y	E	D	D	Y	G	V	A	V	E	Q	G	R	K	A	A	Q	S	D	P	N	C	F	F	.	.	.	.	I
Template Known Secondary structure		S							S	S														T									T	T	S											T	T							S	S		T	T												T		T	T				.	.	.	.
Template Predicted Secondary structure																																																																													.	.	.	.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.					.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		S	R	T	L	F	L	G	Y	S	V	A	G	Q	R	L	K	A	Q	F	A	Q	Q	G	R	I	V	D	A	D	N	P	L	F	V	Y	L	P	C	G	V	G	G	G	P	G	G	V	A	F	G	L	K	L	A	F	G	D	H	V	H	C	F	F	A	E	P	T	H	S	P	C	M	L	L	G	V	H	T	G	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	R	T	L	F	L	G	Y	A	V	A	G	Q	R	L	K	A	Q	F	A	Q	Q	G	R	V	V	D	A	S	H	P	L	F	V	Y	L	P	C	G	V	G	G	G	P	G	G	V	A	F	G	L	K	L	A	F	G	D	N	V	H	C	F	F	A	E	P	T	H	S	P	C	M	L	L	G	V	Y	T	G	L
Template Known Secondary structure											T													T				S	S	S	S									S	S	S															G	G	G									T	T											S
Template Predicted Secondary structure
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
Predicted Secondary structure
Query SS confidence
Query Sequence		H	D	Q	I	S	V	Q	D	I	G	I	D	N	L	T	A	A	D	G	L	A	V	G	R	A	S	G	F	V	G	R	A	M	E	R	L	L	D	G	F	Y	T	L	S	D	Q	T	M	Y	D	M	L	G	W	L	A	Q	E	E	G	I	R	L	E	P	S	A	L	A	G	M	A	G	P	Q	R	V	C	A	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	D	A	I	S	V	Q	D	I	G	I	D	N	L	T	A	A	D	G	L	A	V	G	R	A	S	G	F	V	G	R	A	M	E	R	L	L	D	G	L	Y	T	L	D	D	Q	T	M	Y	D	M	L	G	W	L	A	Q	E	E	G	I	R	L	E	P	S	A	L	A	G	M	A	G	P	Q	R	I	C	A	S
Template Known Secondary structure		G	G	G			S	T	T	T	T						S		G	G	G			S	S										G	G	G		S																											G	G	G	G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	S	Y	Q	Q	M	H	G	F	S	A	E	Q	L	R	N	T	T	H	L	V	W	A	T	G	G	G	M	V	P	E	E	E	M	N	Q	Y	L	A	K	G	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	A	Y	Q	Q	R	H	G	F	S	Q	T	Q	L	G	N	A	T	H	L	V	W	A	T	G	G	G	M	V	P	E	D	E	M	E	Q	Y	L	A	K	G	R
Template Known Secondary structure								T	T								T									B		T	T											T	T
Template Predicted Secondary structure
Template SS confidence
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440