Job Description P00926 Confidence 100.00% Date Thu Jan 5 10:57:11 GMT 2012 Rank 33 Aligned Residues 291 % Identity 21% Template c2o2jA_ PDB info PDB header:lyase Chain: A: PDB Molecule:tryptophan synthase beta chain; PDBTitle: mycobacterium tuberculosis tryptophan synthase beta chain2 dimer (apoform) Resolution 2.56 Å

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		46	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.		.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
Predicted Secondary structure																																			.
Query SS confidence																																			.
Query Sequence		E	Q	D	V	Q	D	A	H	A	R	L	S	R	F	A	P	Y	L	A	K	A	F	P	E	T	A	A	T	G	G	I	I	E	.	S	E	L	V	A	I	P	A	M	Q	K	R	L	E	K	E	Y	Q	Q	P	I	S	G	Q	L	L	L	K	K	D	S	H	L	P	I	S	G	S	I	K	A	R	G	G	I	Y
Query Conservation																																			.
Alig confidence																														.	.				.																.	.	.	.	.	.	.													.
Template Conservation																														.	.																				.	.	.	.	.	.	.													.
Template Sequence		I	E	E	V	T	A	A	Y	Q	K	E	R	V	S	Q	D	F	L	D	D	L	D	R	L	Q	A	N	Y	.	.	A	G	R	P	S	P	L	Y	E	A	T	R	L	S	Q	H	A	G	S	.	.	.	.	.	.	.	A	R	I	F	L	K	R	E	D	L	N	H	.	T	G	S	H	K	I	N	N	V	L	G
Template Known Secondary structure															S												T	T	T	.	.	S	S		S							T	T	T	G	G	G	T	T	T	.	.	.	.	.	.	.								G	G	G			.	T	T
Template Predicted Secondary structure																														.	.																				.	.	.	.	.	.	.													.
Template SS confidence
		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.			.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.								.	.	.	.	.	90	.	.	.	.	.	.		.	.	.	100	.	.	.	.	.	.	.
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.				.	.	.	.	.	.	200	.
Predicted Secondary structure																																																																							.	.	.
Query SS confidence																																																																							.	.	.
Query Sequence		E	V	L	A	H	A	E	K	L	A	L	E	A	G	L	L	T	L	D	D	D	Y	S	K	L	L	S	P	E	F	K	Q	F	F	S	Q	Y	S	I	A	V	G	S	T	G	N	L	G	L	S	I	G	I	M	S	A	R	I	G	F	K	V	T	V	H	M	S	A	D	.	.	.	A	R	A	W	K	K	A	K
Query Conservation																																																																							.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.
Template Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	A	L	L	A	R	R	M	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	T	R	V	I	A	E	T	G	A	G	Q	H	G	V	A	T	A	T	A	C	A	L	L	G	L	D	C	V	I	Y	M	G	G	I	D	T	A	R	Q	A	L	N	V	A	R
Template Known Secondary structure									T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									S	S	S														T														S	S	T	T
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		108	.	110	.	.	.	.	.	.																										.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		202	.	.	.	.	.	.	.	210	.	.	.				.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.								.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure														.	.	.																							.	.	.	.	.	.	.
Query SS confidence														.	.	.																							.	.	.	.	.	.	.
Query Sequence		L	R	S	H	G	V	T	V	V	E	Y	E	.	.	.	Q	D	Y	G	V	A	V	E	E	G	R	K	A	A	Q	S	D	P	N	C	F	F	.	.	.	.	.	.	.	I	D	D	E	N	S	R	T	L	F	L	G	Y	S	V	A	G	Q	R	L	K	A	Q	F	A	Q	Q	G	R	I	V	D	A	D	N	P
Query Conservation														.	.	.																							.	.	.	.	.	.	.
Alig confidence														.	.	.																							.	.	.	.	.	.	.																												.	.	.	.
Template Conservation																																																																									.	.	.	.
Template Sequence		M	R	L	L	G	A	E	V	V	A	V	Q	T	G	S	K	T	L	K	D	A	I	N	E	A	F	R	D	W	V	A	N	A	D	N	T	Y	Y	C	F	G	T	A	A	G	P	H	P	F	P	T	M	V	R	D	F	Q	R	I	I	G	M	E	A	R	V	Q	I	Q	G	Q	.	.	.	.	A	G	R	L	P
Template Known Secondary structure					T	T								S	S	S		S																T	T	T								S	S	S											G	G	G														.	.	.	.		S	S
Template Predicted Secondary structure																																																																									.	.	.	.
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.					.	.	.	.	.
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	F	V	Y	L	P	C	G	V	G	G	G	P	G	G	V	A	F	G	L	K	L	A	F	G	D	H	V	H	C	F	F	A	E	P	T	H	S	P	C	M	L	L	G	V	H	T	G	L	H	D	Q	I	S	V	Q	D	I	G	I	D	N	L	T	A	A	D	G	L	A	V	G	R	A	S	G	F	V	G	R
Query Conservation
Alig confidence																								.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	A	V	V	A	C	V	G	G	G	S	N	A	I	G	I	F	H	A	F	L	D	.	.	D	P	G	V	R	L	V	G	F	E	A	A	G	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		S							S	S		T	T	S	G	G	G	S	G	G	G	T	T	.	.		T	T	S											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																								.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260			.	.	.	.	.	.	.	.	.	270	.	.	.	.
		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	M	E	R	L	L	D	G	F	Y	T	L	S	D	Q	T	M	Y	D	M	L	G	W	L	A	Q	E	E	G	I	R	L	E	P	S	A	L	A	G	M	A	G	P	Q	R	V	C	A	S	V	S	Y	Q	Q	M	H	G	F	S	A	E	Q	L	R	N	T	T	H	L	V	W	A	T	G	G	G	M	V	P	E
Query Conservation
Alig confidence		.	.	.	.	.	.																																											.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.																																											.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	V	D	Y	R	P	I	T	D	S	E	A	M	D	A	F	G	L	L	C	R	M	E	G	I	I	P	A	I	E	S	A	H	A	V	A	G	A	L	K	L	G	V	.	.	.	.	.	.	.	.	.	.	.	.	E	L	G	R	G	A	V	I	V	V	N	L	S	G	R	G	D	K	D	V
Template Known Secondary structure		.	.	.	.	.	.																						S																					.	.	.	.	.	.	.	.	.	.	.	.				T	T									S		S	S	S
Template Predicted Secondary structure		.	.	.	.	.	.																																											.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
								336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.													.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
		432	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	E	M	N	Q	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	T	A	A	K	W
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		398	.	400	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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