Job Description P00926 Confidence 100.00% Date Thu Jan 5 10:57:11 GMT 2012 Rank 21 Aligned Residues 344 % Identity 15% Template c1x1qA_ PDB info PDB header:lyase Chain: A: PDB Molecule:tryptophan synthase beta chain; PDBTitle: crystal structure of tryptophan synthase beta chain from thermus2 thermophilus hb8 Resolution 2.50 Å

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		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	P	Y	V	G	L	T	E	Q	D	V	Q	D	A	H	A	R	L	S	R	F	A	P	Y	L	A	K	A	F	P	E	T	A	A	T	G	G	I	I	E	S	E	L	V	A	I	P	A	M	Q	K	R	L	E	K	E	Y	Q	Q	P	I	S	G	Q	L	L	L	K	K	D	S	H	L	P	I	S	G	S	I
Query Conservation
Alig confidence																																								.																		.	.	.	.	.	.	.													.
Template Conservation																																								.																		.	.	.	.	.	.	.													.
Template Sequence		V	P	E	T	L	I	P	A	L	E	E	L	E	A	A	Y	R	E	A	K	K	D	P	A	F	L	E	E	L	D	H	Y	L	R	Q	F	A	G	.	R	P	T	P	L	Y	H	A	K	R	L	S	E	Y	W	G	G	.	.	.	.	.	.	.	A	Q	V	F	L	K	R	E	D	L	L	H	.	T	G	A	H
Template Known Secondary structure				T	T	T																															T	T		.		S														T	S	.	.	.	.	.	.	.	S							G	G	G	S	G	.	G	G	B	T
Template Predicted Secondary structure																																								.																		.	.	.	.	.	.	.													.
Template SS confidence
		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.		.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.								.	.	.	.	.	.	.	100	.	.	.	.		.	.	.	.
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.				190	.	.	.	.
Predicted Secondary structure																																																																										.	.	.
Query SS confidence																																																																										.	.	.
Query Sequence		K	A	R	G	G	I	Y	E	V	L	A	H	A	E	K	L	A	L	E	A	G	L	L	T	L	D	D	D	Y	S	K	L	L	S	P	E	F	K	Q	F	F	S	Q	Y	S	I	A	V	G	S	T	G	N	L	G	L	S	I	G	I	M	S	A	R	I	G	F	K	V	T	V	H	.	.	.	M	S	A	D	A
Query Conservation																																																																										.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	I	N	N	T	L	G	Q	A	L	L	A	R	R	X	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	R	R	V	I	A	E	T	G	A	G	Q	H	G	V	S	V	A	T	V	A	A	L	F	G	L	E	C	V	V	Y	X	G	E	E	D	V	R	R
Template Known Secondary structure		T															T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									S	S	S														T														T
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.																										.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.				.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.								.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure																					.	.	.																								.	.	.	.	.	.	.
Query SS confidence																					.	.	.																								.	.	.	.	.	.	.
Query Sequence		R	A	W	K	K	A	K	L	R	S	H	G	V	T	V	V	E	Y	E	.	.	.	Q	D	Y	G	V	A	V	E	E	G	R	K	A	A	Q	S	D	P	N	C	F	F	I	.	.	.	.	.	.	.	D	D	E	N	S	R	T	L	F	L	G	Y	S	V	A	G	Q	R	L	K	A	Q	F	A	Q	Q	G	R
Query Conservation																					.	.	.																								.	.	.	.	.	.	.
Alig confidence																					.	.	.																								.	.	.	.	.	.	.																											.	.
Template Conservation																																																																																.	.
Template Sequence		Q	A	L	N	V	F	R	X	K	L	L	G	A	E	V	R	P	V	A	A	G	S	R	T	L	K	D	A	T	N	E	A	I	R	D	W	I	T	N	V	R	T	T	F	Y	I	L	G	S	V	V	G	P	H	P	Y	P	X	X	V	R	D	F	Q	S	V	I	G	E	E	V	K	R	Q	S	L	E	L	.	.
Template Known Secondary structure												T	T								S	T	T	S	S															T	T	T	T								S	S	S	S	T	T										T														.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.					.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure																																														.	.	.	.
Query SS confidence																																														.	.	.	.
Query Sequence		I	V	D	A	D	N	P	L	F	V	Y	L	P	C	G	V	G	G	G	P	G	G	V	A	F	G	L	K	L	A	F	G	D	H	V	H	C	F	F	A	E	P	T	H	.	.	.	.	S	P	C	M	L	L	G	V	H	T	G	L	H	D	Q	I	S	V	Q	D	I	G	I	D	N	L	T	A	A	D	G	L
Query Conservation																																														.	.	.	.
Alig confidence		.	.																																											.	.	.	.																					.	.	.	.	.	.	.
Template Conservation		.	.																																																																			.	.	.	.	.	.	.
Template Sequence		.	.	F	G	R	L	P	D	A	L	I	A	A	V	G	G	G	S	N	A	I	G	L	F	A	P	F	A	Y	L	P	E	G	R	P	K	L	I	G	V	E	A	A	G	E	G	L	S	T	G	R	H	A	A	S	I	G	A	G	K	R	G	V	L	H	G	S	Y	.	.	.	.	.	.	.	X	Y	L	L	Y
Template Known Secondary structure		.	.		S	S			S							S	S	S	S											T	S		T	T												T	T	S	S	S										T						T	T			.	.	.	.	.	.	.			B
Template Predicted Secondary structure		.	.																																																																			.	.	.	.	.	.	.
Template SS confidence
				242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.								.	.	310	.	.
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	G	R	A	S	G	F	V	G	R	A	M	E	R	L	L	D	G	F	Y	T	L	S	D	Q	T	M	Y	D	M	L	G	W	L	A	Q	E	E	G	I	R	L	E	P	S	A	L	A	G	M	A	G	P	Q	R	V	C	A	S	V	S	Y	Q	Q	M	H	G	F	S	A	E	Q	L	R	N	T	T	H	L
Query Conservation
Alig confidence																																																													.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																													.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	Y	P	G	V	G	P	E	H	S	Y	Y	A	D	A	G	V	A	E	Y	A	S	V	T	D	E	E	A	L	E	G	F	K	L	L	A	R	L	E	G	I	I	P	A	L	E	S	A	H	A	I	A	Y	A	A	K	V	V	P	.	.	.	.	.	.	.	.	.	.	.	.	E	X	D	K	D	Q	V	V	V
Template Known Secondary structure				S	B												T	S																							S			B															T	T	.	.	.	.	.	.	.	.	.	.	.	.	T	S		T	T
Template Predicted Secondary structure																																																													.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.													.	.	390	.	.	.	.	.	.
		421	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	W	A	T	G	G	G	M	V	P	E	E	E	M	N	Q	Y	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	N	L	S	G	R	G	D	K	D	V	T	E	V	X	R	L	L
Template Known Secondary structure						B	B	G	G	G	T							T
Template Predicted Secondary structure
Template SS confidence
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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