Job Description P33224 Confidence 100.00% Date Thu Jan 5 11:51:23 GMT 2012 Rank 25 Aligned Residues 360 % Identity 20% Template c3pfdB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:acyl-coa dehydrogenase; PDBTitle: crystal structure of an acyl-coa dehydrogenase from mycobacterium2 thermoresistibile bound to reduced flavin adenine dinucleotide solved3 by combined iodide ion sad mr Resolution 2.10 Å

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	E	A	V	T	R	E	G	A	G	W	D	S	D	F	L	A	S	I	G	Q	Q	L	G	T	A	E	S	L	E	L	G	R	L	A	N	V	N	P	P	E	L	L	R	Y	D	A	Q	G	R	R	L	D	D	V	R	F	H	P	A	W	H	L	L	M	Q	A	L	C	T	N	R	V	H	N	L	A	W	E	E
Query Conservation
Alig confidence																									.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		H	I	A	L	R	E	A	I	R	A	L	A	E	K	E	I	A	P	Y	A	A	E	V	.	.	.	.	.	.	.	.	.	.	D	E	K	A	R	F	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	E	A	L	A	A	L	N	S	S	G	F	S	A	I	H	V	P	E
Template Known Secondary structure																	T	G	G	G					.	.	.	.	.	.	.	.	.	.			T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											T		S		T	T	S		G
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.											.	.	.	.	.	.	.																						.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.
		108	.	110	.	.	.			.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.		.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure								.	.																																											.
Query SS confidence								.	.																																											.
Query Sequence		D	A	R	S	G	A	.	.	F	V	A	R	A	A	R	F	M	L	H	A	Q	V	E	A	G	S	L	C	P	I	T	M	T	F	A	A	T	P	L	L	L	Q	M	L	P	A	P	F	Q	D	.	W	T	T	P	L	L	S	D	R	Y	D	S	H	L	L	P	G	G	Q	K	R	G	L	L	I	G	M	G	M
Query Conservation								.	.																																											.
Alig confidence								.	.																																											.										.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	Y	G	G	Q	G	A	D	S	V	A	T	C	I	V	I	E	E	V	A	R	V	D	C	S	A	S	L	I	P	A	V	N	K	L	G	T	M	G	L	I	L	R	G	S	E	E	L	K	K	Q	V	L	P	A	V	A	S	G	E	.	.	.	.	.	.	.	.	.	.	.	.	.	A	M	A	S	Y	A	L
Template Known Secondary structure		G	G	T																		T	T														T	T																						T	S	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.														.	.	130	.	.	.	.
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220		.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure																																						.
Query SS confidence																																						.
Query Sequence		T	E	K	Q	G	G	S	D	V	M	S	N	T	T	R	A	E	R	L	E	D	G	S	Y	R	L	V	G	H	K	W	F	F	S	V	P	.	Q	S	D	A	H	L	V	L	A	Q	T	A	G	G	L	S	C	F	F	V	P	R	F	L	P	D	G	Q	R	N	A	I	R	L	E	R	L	K	D	K	L	G	N
Query Conservation																																						.
Alig confidence																								.														.
Template Conservation																								.
Template Sequence		S	E	R	E	A	G	S	D	A	A	S	M	R	T	R	A	V	A	D	G	D	D	.	W	I	L	N	G	S	K	C	W	I	T	N	G	G	K	S	T	W	Y	T	V	M	A	V	T	D	P	D	K	G	A	N	G	I	S	A	F	M	V	H	K	D	D	E	G	F	T	V	G	P	K	E	R	K	L	G	I
Template Known Secondary structure			B	T	T	B	S	S	S	G	G	G									T	T		.												T	T	T	T		S								S		G	G	G	G	G	G	G								T	T		T	T										S	S
Template Predicted Secondary structure																								.
Template SS confidence
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.		.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.				280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure																		.	.	.
Query SS confidence																		.	.	.
Query Sequence		R	S	N	A	S	C	E	V	E	F	Q	D	A	I	G	W	.	.	.	L	L	G	L	E	G	E	G	I	R	L	I	L	K	M	G	G	M	T	R	F	D	C	A	L	G	S	H	A	M	M	R	R	A	F	S	L	A	I	Y	H	A	H	Q	R	H	V	F	G	N	P	L	I	Q	Q	P	L	M	R	H	V
Query Conservation																		.	.	.
Alig confidence																		.	.	.
Template Conservation
Template Sequence		K	G	S	P	T	T	E	L	Y	F	E	N	C	R	I	P	G	D	R	I	I	G	E	P	G	T	G	F	K	T	A	L	A	T	L	D	H	T	R	P	T	I	G	A	Q	A	V	G	I	A	Q	G	A	L	D	A	A	I	A	Y	T	K	E	R	K	Q	F	G	R	P	V	S	D	N	Q	G	V	Q	F	M
Template Known Secondary structure		T	T	S														G	G	G			S	S	T	T												T	T																													T	T			G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	R	M	A	L	Q	L	E	G	Q	T	A	L	L	F	R	L	A	R	A	W	D	R	R	A	D	A	K	E	A	L	W	A	R	L	F	T	P	A	A	K	F	V	I	C	K	R	G	M	P	F	V	A	E	A	M	E	V	L	G	G	I	G	Y	C	E	E	S	E	L	P	R	L	Y	R	E	M	P	V
Query Conservation
Alig confidence																														.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.
Template Sequence		L	A	D	M	A	M	K	I	E	A	A	R	L	M	V	Y	S	A	A	A	R	A	E	R	G	G	F	I	.	.	.	.	.	.	.	.	.	S	A	A	S	K	C	F	A	S	D	V	A	M	E	V	T	T	D	A	V	Q	L	F	G	G	Y	G	Y	T	Q	D	F	P	V	E	R	M	M	R	D	A	K	I
Template Known Secondary structure																														.	.	.	.	.	.	.	.	.																							T	G	G	G	G	G	S	T	T	S	S
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.
Template SS confidence
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.										.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
		421	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	S	I	W	E	G	S	G	N	I	M	C	L	D	V	L	R	V	L	N	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	Q	I	Y	E	G	T	N	Q	I	Q	R	V	V	M	S	R	A	L	L	R
Template Known Secondary structure			T	T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		369	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions