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Job DescriptionP33224
Confidence100.00%DateThu Jan 5 11:51:23 GMT 2012
Rank25Aligned Residues360
% Identity20%Templatec3pfdB_
PDB info PDB header:oxidoreductaseChain: B: PDB Molecule:acyl-coa dehydrogenase; PDBTitle: crystal structure of an acyl-coa dehydrogenase from mycobacterium2 thermoresistibile bound to reduced flavin adenine dinucleotide solved3 by combined iodide ion sad mr
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   28.30.........40.........50.........60.........70.........80.........90.........100.......
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Query Sequence  CEAVTREGAGWDSDFLASIGQQLGTAESLELGRLANVNPPELLRYDAQGRRLDDVRFHPAWHLLMQALCTNRVHNLAWEE
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Template Sequence  HIALREAIRALAEKEIAPYAAEV. . . . . . . . . . DEKARFP. . . . . . . . . . . . . . . . . . . . . EEALAALNSSGFSAIHVPE
Template Known Secondary structure  TGGG..........TT


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   1920.........30.........40. ....... .50.........60.......
 
   108.110... ......120.........130.........140.........150..... ....160.........170.........180....
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Query Sequence  DARSGA. . FVARAARFMLHAQVEAGSLCPITMTFAATPLLLQMLPAPFQD. WTTPLLSDRYDSHLLPGGQKRGLLIGMGM
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Template Sequence  EYGGQGADSVATCIVIEEVARVDCSASLIPAVNKLGTMGLILRGSEELKKQVLPAVASGE. . . . . . . . . . . . . AMASYAL
Template Known Secondary structure  GGT




TT
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   68.70.........80.........90.........100.........110.........120....... ..130....
 
   185....190.........200.........210.........220 .........230.........240.........250.........260...
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Query Sequence  TEKQGGSDVMSNTTRAERLEDGSYRLVGHKWFFSVP. QSDAHLVLAQTAGGLSCFFVPRFLPDGQRNAIRLERLKDKLGN
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Template Sequence  SEREAGSDAASMRTRAVADGDD. WILNGSKCWITNGGKSTWYTVMAVTDPDKGANGISAFMVHKDDEGFTVGPKERKLGI
Template Known Secondary structure 
BTTBSSSGGG


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GGGGGGGTT
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   135....140.........150...... ...160.........170.........180.........190.........200.........210...
 
   264.....270......... 280.........290.........300.........310.........320.........330.........340
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Query Sequence  RSNASCEVEFQDAIGW. . . LLGLEGEGIRLILKMGGMTRFDCALGSHAMMRRAFSLAIYHAHQRHVFGNPLIQQPLMRHV
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Template Sequence  KGSPTTELYFENCRIPGDRIIGEPGTGFKTALATLDHTRPTIGAQAVGIAQGALDAAIAYTKERKQFGRPVSDNQGVQFM
Template Known Secondary structure  TTS
GGGSSTT
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   214.....220.........230.........240.........250.........260.........270.........280.........290...
 
   341........350.........360.........370.........380.........390.........400.........410.........420
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Query Sequence  LSRMALQLEGQTALLFRLARAWDRRADAKEALWARLFTPAAKFVICKRGMPFVAEAMEVLGGIGYCEESELPRLYREMPV
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Template Sequence  LADMAMKIEAARLMVYSAAARAERGGFI. . . . . . . . . SAASKCFASDVAMEVTTDAVQLFGGYGYTQDFPVERMMRDAKI
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   294.....300.........310.........320. ........330.........340.........350.........360....
 
   421........430.........440.
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Query Sequence  NSIWEGSGNIMCLDVLRVLNK
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Template Sequence  TQIYEGTNQIQRVVMSRALLR
Template Known Secondary structure  TTSSS

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   369370.........380.........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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