Job Description P33224 Confidence 100.00% Date Thu Jan 5 11:51:23 GMT 2012 Rank 3 Aligned Residues 481 % Identity 16% Template c3owaC_ PDB info PDB header:oxidoreductase Chain: C: PDB Molecule:acyl-coa dehydrogenase; PDBTitle: crystal structure of acyl-coa dehydrogenase complexed with fad from2 bacillus anthracis Resolution 1.97 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	W	Q	T	H	T	V	F	N	Q	P	I	P	L	N	N	S	N	L	Y	L	S	D	G	A	L	C	E	A	V	T	R	E	G	A	G	W	D	S	D	F	L	A	S	I	G	Q	Q	L	G	T	A	E	S	L	E	L	G	R	L	A	N	V	N	P	P	E	L	L	R	Y	D	A	Q	G	R	R	L	D	D
Query Conservation
Alig confidence										.																																							.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.																																							.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	F	L	V	D	E	I	T	.	I	D	Q	V	F	T	P	E	D	F	S	S	E	H	K	X	I	A	K	T	T	E	D	F	I	V	N	E	V	L	P	E	L	E	Y	L	E	Q	.	.	H	E	F	D	R	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		G	G	G	T	S				.	G	G	G				G	G	G																				T	G	G	G					T	T	.	.	T						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure										.																																							.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		13	.	.	.	.	.	.	20		.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.			.	60	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140				.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																													.	.	.
Query SS confidence																																																													.	.	.
Query Sequence		V	R	F	H	P	A	W	H	L	L	M	Q	A	L	C	T	N	R	V	H	N	L	A	W	E	E	D	A	R	S	G	A	F	V	A	R	A	A	R	F	M	L	H	A	Q	V	E	A	G	S	L	C	P	I	T	M	T	F	A	.	.	.	A	T	P	L	L	L	Q	M	L	P	A	P	F	Q	D	W	T	T
Query Conservation																																																													.	.	.
Alig confidence		.	.	.	.	.	.	.																																																					.	.	.
Template Conservation		.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	V	R	L	L	K	E	A	G	E	L	G	L	L	G	A	D	V	P	E	E	Y	G	G	I	G	L	D	K	V	S	S	A	L	I	A	E	K	F	S	R	A	G	G	F	A	I	T	H	G	A	H	V	G	I	G	S	L	P	I	V	L	F	G	N	E	E	Q	K	K	K	Y	L	P
Template Known Secondary structure		.	.	.	.	.	.	.										T	T	T	T		T	T	S		G	G	G	T	S																G	G	G	T											T	T	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.
Template SS confidence
									65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.		.	.	210	.	.	.	.	.	.	.	.	.	220		.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure																																																			.														.
Query SS confidence																																																			.														.
Query Sequence		P	L	L	S	D	R	Y	D	S	H	L	L	P	G	G	Q	K	R	G	L	L	I	G	M	G	M	T	E	K	Q	G	G	S	D	V	M	S	N	T	T	R	A	E	R	L	E	D	G	S	.	Y	R	L	V	G	H	K	W	F	F	S	V	P	.	Q	S	D	A	H	L	V	L	A	Q	T	A	G	G	L	S
Query Conservation																																																			.														.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.																															.														.															.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.																																																												.	.
Template Sequence		L	L	A	T	G	E	.	.	.	.	.	.	.	.	.	.	.	.	.	K	L	A	A	Y	A	L	T	E	P	G	S	G	S	D	A	L	G	A	K	T	T	A	R	L	N	A	E	G	T	H	Y	V	L	N	G	E	K	Q	W	I	T	N	S	A	F	A	D	V	F	I	V	Y	A	K	I	D	G	E	.	.
Template Known Secondary structure						T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	S								B	T	T	B	S	S	S	G	G	G									T	T	S	S													T	T	T	T		S									T	T	T	.	.
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.																																																												.	.
Template SS confidence
		138	.	140	.	.	.														.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.				280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure																																													.	.	.
Query SS confidence																																													.	.	.
Query Sequence		C	F	F	V	P	R	F	L	P	D	G	Q	R	N	A	I	R	L	E	R	L	K	D	K	L	G	N	R	S	N	A	S	C	E	V	E	F	Q	D	A	I	G	W	.	.	.	L	L	G	L	E	G	E	G	I	R	L	I	L	K	M	G	G	M	T	R	F	D	C	A	L	G	S	H	A	M	M	R	R	A
Query Conservation																																													.	.	.
Alig confidence		.	.																																										.	.	.
Template Conservation		.	.
Template Sequence		.	.	H	F	S	A	F	I	V	E	K	D	Y	A	G	V	S	T	S	P	E	E	K	K	X	G	I	K	C	S	S	T	R	T	L	I	L	E	D	A	L	V	P	K	E	N	L	L	G	E	I	G	K	G	H	I	I	A	F	N	I	L	N	I	G	R	Y	K	L	G	V	G	T	V	G	S	A	K	R	A
Template Known Secondary structure		.	.									T	T	S	T	T										S	S		T	T	S														G	G	G			S		T	T
Template Predicted Secondary structure		.	.
Template SS confidence
				203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.														.	370	.	.	.	.	.	.	.	.	.	380
Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	S	L	A	I	Y	H	A	H	Q	R	H	V	F	G	N	P	L	I	Q	Q	P	L	M	R	H	V	L	S	R	M	A	L	Q	L	E	G	Q	T	A	L	L	F	R	L	A	R	A	W	D	R	R	A	D	A	.	.	.	.	.	.	.	.	.	.	.	.	.	K	E	A	L	W	A	R	L	F	T	P	A
Query Conservation																																																									.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																									.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	E	I	S	A	Q	Y	A	N	Q	R	Q	Q	F	K	Q	P	I	A	R	F	P	L	I	Q	E	K	L	A	N	X	A	A	K	T	Y	A	A	E	S	S	V	Y	R	T	V	G	L	F	E	S	R	X	S	T	L	S	E	E	E	V	K	D	G	K	A	V	A	A	S	I	A	E	Y	A	I	E	C	S	L
Template Known Secondary structure															T	T			G	G	G	S																																	T	T									S									T	T
Template Predicted Secondary structure
Template SS confidence
		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
		381	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	F	V	I	C	K	R	G	M	P	F	V	A	E	A	M	E	V	L	G	G	I	G	Y	C	E	E	S	E	L	P	R	L	Y	R	E	M	P	V	N	S	I	W	E	G	S	G	N	I	M	C	L	D	V	L	R	V	L	N	K	Q	A	G	V	Y	D	L	L	S	E	A	F	V	E	V	K	G	Q	D
Query Conservation
Alig confidence																																																																.	.
Template Conservation																																																																.	.
Template Sequence		N	K	V	F	G	S	E	V	L	D	Y	T	V	D	E	G	V	Q	I	H	G	G	Y	G	F	X	A	E	Y	E	I	E	R	X	Y	R	D	S	R	I	N	R	I	F	E	G	T	N	E	I	N	R	L	I	V	P	G	T	F	L	R	K	.	.	A	X	K	G	E	L	P	L	L	Q	K	A	Q	K	L	Q
Template Known Secondary structure																						G	G	G	G	G	S	T	T	S										G	G	G	G	T	S	S	S																	.	.			T	T	S	S
Template Predicted Secondary structure																																																																.	.
Template SS confidence
		361	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.			.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.
		461	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Y	F	D	R	A	V	R	R	L	Q	Q	Q	L	R	K	P	A	E	E	L	G	R	E	I	T	H	Q	L	F	L	L	G	C	G	A	Q	M	L	K	Y	A	S	P	P	M	A	Q	A	W	C	Q	V	M	L	D	T	R	G	G	V	R	L	S	E	Q	I	Q	N	D	L	L	L	R	A	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	E	L	X	X	X	X	P	E	E	V	G	D	E	P	L	A	L	Q	K	Y	L	V	N	N	A	K	K	I	G	L	X	V	A	G	L	A	A	Q	K	Y	G	K	A	L	D	K	E	Q	E	I	L	V	N	I	A	D	I	V	S	N	L	Y	A	X	E	S	A	V	L	R	T	E	K	A	I
Template Known Secondary structure					T	T	T							S	S	T	T																										G	G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		439	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.