Job Description P33224 Confidence 100.00% Date Thu Jan 5 11:51:23 GMT 2012 Rank 33 Aligned Residues 353 % Identity 21% Template c3nf4B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:acyl-coa dehydrogenase; PDBTitle: crystal structure of acyl-coa dehydrogenase from mycobacterium2 thermoresistibile bound to flavin adenine dinucleotide Resolution 2.35 Å

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		45	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.						.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.
Query SS confidence																				.	.	.	.	.
Query Sequence		S	I	G	Q	Q	L	G	T	A	E	S	L	E	L	G	R	L	A	.	.	.	.	.	N	V	N	P	P	E	L	L	R	Y	D	A	Q	G	R	R	L	D	D	V	R	F	H	P	A	W	H	L	L	M	Q	A	L	C	T	N	R	V	H	N	L	A	W	E	E	D	A	R	S	G	A	F	V	A	R	A	A
Query Conservation																				.	.	.	.	.
Alig confidence																				.	.	.	.	.																		.	.	.	.	.	.	.	.	.
Template Conservation																																										.	.	.	.	.	.	.	.	.
Template Sequence		A	V	D	R	L	L	P	S	Q	E	A	A	E	L	I	E	L	T	R	E	I	A	D	K	V	L	D	P	I	V	D	R	H	E	K	D	E	T	Y	P	.	.	.	.	.	.	.	.	.	E	G	V	F	E	Q	L	G	A	A	G	L	L	S	L	P	Q	P	E	E	W	G	G	G	G	Q	P	Y	E	V	Y
Template Known Secondary structure								S																			T	T	T	T								T				.	.	.	.	.	.	.	.	.	T	T								T	T	T	T	S	S	S	S		G	G	G	T	S
Template Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.										.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140				.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.
Query SS confidence																							.	.	.
Query Sequence		R	F	M	L	H	A	Q	V	E	A	G	S	L	C	P	I	T	M	T	F	A	.	.	.	A	T	P	L	L	L	Q	M	L	P	A	P	F	Q	D	W	T	T	P	L	L	S	D	R	Y	D	S	H	L	L	P	G	G	Q	K	R	G	L	L	I	G	M	G	M	T	E	K	Q	G	G	S	D	V	M	S	N
Query Conservation																							.	.	.
Alig confidence																							.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.
Template Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.
Template Sequence		L	Q	V	L	E	E	I	A	A	R	W	A	S	V	A	V	A	V	S	V	H	S	L	S	S	H	P	L	L	V	F	G	T	E	E	Q	K	K	R	W	L	P	G	M	L	S	G	E	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	I	G	A	Y	S	L	S	E	P	R	.	.	.	.	.	.	.	.
Template Known Secondary structure										T	T															T																				T	S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.														.	.	.	.	.	130	.	.	.	.	.
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220		.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure																										.
Query SS confidence																										.
Query Sequence		T	T	R	A	E	R	L	E	D	G	S	Y	R	L	V	G	H	K	W	F	F	S	V	P	.	Q	S	D	A	H	L	V	L	A	Q	T	A	G	G	L	S	C	F	F	V	P	R	F	L	P	D	G	Q	R	N	A	I	R	L	E	R	L	K	D	K	L	G	N	R	S	N	A	S	C	E	V	E	F	Q	D
Query Conservation																										.
Alig confidence		.										.														.																.	.	.	.
Template Conservation		.										.																														.	.	.	.
Template Sequence		.	C	A	A	T	P	T	D	G	G	.	Y	V	I	N	G	S	K	S	W	I	T	H	G	G	K	A	D	F	Y	T	L	F	A	R	T	G	S	R	G	.	.	.	.	V	S	C	F	L	V	P	A	D	Q	P	G	L	S	F	G	K	P	E	E	K	M	G	L	H	A	V	P	T	T	S	A	F	Y	D	N
Template Known Secondary structure		.							T	T		.												T	T	T	T		S										T	T		.	.	.	.								T	T		T	T										S	S			S	S
Template Predicted Secondary structure		.										.																														.	.	.	.
Template SS confidence
			145	.	.	.	.	150	.	.	.		.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.					.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
		276	.	.	.				280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
Predicted Secondary structure						.	.	.
Query SS confidence						.	.	.
Query Sequence		A	I	G	W	.	.	.	L	L	G	L	E	G	E	G	I	R	L	I	L	K	M	G	G	M	T	R	F	D	C	A	L	G	S	H	A	M	M	R	R	A	F	S	L	A	I	Y	H	A	H	Q	R	H	V	F	G	N	P	L	I	Q	Q	P	L	M	R	H	V	L	S	R	M	A	L	Q	L	E	G	Q	T
Query Conservation						.	.	.
Alig confidence						.	.	.
Template Conservation
Template Sequence		A	R	I	D	A	D	R	R	I	G	E	E	G	Q	G	L	Q	I	A	F	S	A	L	D	S	G	R	L	G	I	A	A	V	A	T	G	L	A	Q	A	A	L	D	E	A	V	A	Y	A	N	E	R	T	A	F	G	R	K	I	I	D	H	Q	G	L	G	F	L	L	A	D	M	A	A	A	V	A	T	A	R
Template Known Secondary structure						G	G	G			S	S	T	T								T	T																												T	T				T	T			G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	L	F	R	L	A	R	A	W	D	R	R	A	D	A	K	E	A	L	W	A	R	L	F	T	P	A	A	K	F	V	I	C	K	R	G	M	P	F	V	A	E	A	M	E	V	L	G	G	I	G	Y	C	E	E	S	E	L	P	R	L	Y	R	E	M	P	V	N	S	I	W	E	G	S	G	N	I	M	C
Query Conservation
Alig confidence																			.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.
Template Sequence		A	T	Y	L	D	A	A	R	R	R	D	Q	G	R	P	Y	S	.	.	.	.	.	.	Q	Q	A	S	I	A	K	L	T	A	T	D	A	A	M	K	V	T	T	D	A	V	Q	V	F	G	G	V	G	Y	T	R	D	Y	R	V	E	R	Y	M	R	E	A	K	I	M	Q	I	F	E	G	T	N	Q	I	Q	R
Template Known Secondary structure													T	T					.	.	.	.	.	.																										G	G	G	G	G	S	T	T	S	S												T	T	S	S	S
Template Predicted Secondary structure																			.	.	.	.	.	.
Template SS confidence
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.							.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
		433	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	V	L	R	V	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	V	I	A	R	G	L
Template Known Secondary structure							T	T
Template Predicted Secondary structure
Template SS confidence
		375	.	.	.	.	380	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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