Job Description P33224 Confidence 100.00% Date Thu Jan 5 11:51:23 GMT 2012 Rank 34 Aligned Residues 331 % Identity 14% Template c3m9vA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:fad-dependent oxidoreductase; PDBTitle: x-ray structure of a kijd3 in complex with dtdp Resolution 2.05 Å

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		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.						.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure																																						.	.	.	.	.
Query SS confidence																																						.	.	.	.	.
Query Sequence		H	L	L	M	Q	A	L	C	T	N	R	V	H	N	L	A	W	E	E	D	A	R	S	G	A	F	V	A	R	A	A	R	F	M	L	H	.	.	.	.	.	A	Q	V	E	A	G	S	L	C	P	I	T	M	T	F	A	A	T	P	L	L	L	Q	M	L	P	A	P	F	Q	D	W	T	T	P	L	L	S	D
Query Conservation																																						.	.	.	.	.
Alig confidence																																						.	.	.	.	.
Template Conservation
Template Sequence		T	D	T	F	D	A	L	R	K	D	G	L	M	G	A	T	V	P	A	E	L	G	G	L	G	V	D	R	L	Y	D	V	A	V	A	L	L	A	V	A	R	A	D	A	S	T	A	L	A	L	H	M	Q	L	S	R	G	L	T	L	G	Y	E	W	R	H	G	D	E	R	A	R	T	L	A	E	R	I	L	R
Template Known Secondary structure											T	T	G	G	G	T	T	S		G	G	G	T	S																																												S
Template Predicted Secondary structure
Template SS confidence
		51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220		.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure																																																											.
Query SS confidence																																																											.
Query Sequence		R	Y	D	S	H	L	L	P	G	G	Q	K	R	G	L	L	I	G	M	G	M	T	E	K	Q	G	G	S	D	V	M	S	N	T	T	R	A	E	R	L	E	D	G	S	Y	R	L	V	G	H	K	W	F	F	S	V	P	.	Q	S	D	A	H	L	V	L	A	Q	T	A	G	G	L	S	C	F	F	V	P	R
Query Conservation																																																											.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.																														.														.																		.	.
Template Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.																														.																																.	.
Template Sequence		G	.	.	.	.	.	.	.	.	.	.	.	.	.	M	V	A	G	D	A	V	V	C	S	G	I	K	D	H	H	T	A	V	T	T	L	R	P	D	G	A	G	G	.	W	L	L	S	G	R	K	T	L	V	S	M	A	P	V	G	T	H	F	V	I	N	A	R	T	D	G	G	P	P	R	.	.	L	A	S
Template Known Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.				T												T	T									S	S	S		.											T	T	G	G	G		S															.	.
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.																														.																																.	.
Template SS confidence
		131														.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160		.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.			.	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.				280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																							.	.	.
Query SS confidence																																							.	.	.
Query Sequence		F	L	P	D	G	Q	R	N	A	I	R	L	E	R	L	K	D	K	L	G	N	R	S	N	A	S	C	E	V	E	F	Q	D	A	I	G	W	.	.	.	L	L	G	L	E	G	E	G	I	R	L	I	L	K	M	G	G	M	T	R	F	D	C	A	L	G	S	H	A	M	M	R	R	A	F	S	L	A	I	Y
Query Conservation																																							.	.	.
Alig confidence																																							.	.	.
Template Conservation
Template Sequence		P	V	V	T	R	D	T	P	G	F	T	V	L	D	N	W	D	G	L	G	M	R	A	S	G	T	V	D	I	V	F	D	D	C	P	I	P	A	D	H	V	L	M	R	D	P	A	R	N	D	A	V	L	A	G	Q	T	V	S	S	V	S	V	L	G	V	Y	V	G	V	A	Q	A	A	Y	D	T	A	V	A
Template Known Secondary structure						T	T		T	T										S	S		T	T	S														G	G	G										G	G	G									G	G	G
Template Predicted Secondary structure
Template SS confidence
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.			.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.
Query SS confidence																			.	.
Query Sequence		H	A	H	Q	R	H	V	F	G	N	P	L	I	Q	Q	P	L	.	.	M	R	H	V	L	S	R	M	A	L	Q	L	E	G	Q	T	A	L	L	F	R	L	A	R	A	W	D	R	R	A	D	A	K	E	A	L	W	A	R	L	F	T	P	A	A	K	F	V	I	C	K	R	G	M	P	F	V	A	E	A	M
Query Conservation																			.	.
Alig confidence																			.	.																																		.
Template Conservation																																																						.
Template Sequence		A	L	E	R	R	P	E	P	P	Q	A	A	A	L	T	L	V	A	E	I	D	S	R	L	Y	A	L	R	A	T	A	G	S	A	L	T	A	A	D	A	L	S	A	D	L	S	G	D	M	D	E	R	.	G	R	Q	M	M	R	H	F	Q	C	A	K	L	A	V	N	R	L	A	P	E	I	V	S	D	C	L
Template Known Secondary structure					T		S	S																																							S	S						.
Template Predicted Secondary structure																																																						.
Template SS confidence
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330		.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
		398	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	V	L	G	G	I	G	Y	C	E	E	S	E	L	P	R	L	Y	R	E	M	P	V	N	S	I	W	E	G	S	G	N	I	M	C	L	D	V	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	L	V	G	G	A	S	Y	T	A	G	H	P	L	A	R	L	L	R	D	V	Q	A	G	R	F	M	Q	P	Y	A	Y	V	D	A	V	D	F	L
Template Known Secondary structure						G	G	G	G	S	T	T	S									T	T	G	G	G	T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions