Job Description P33224 Confidence 100.00% Date Thu Jan 5 11:51:23 GMT 2012 Rank 32 Aligned Residues 364 % Identity 19% Template c3eomD_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:glutaryl-coa dehydrogenase; PDBTitle: 2.4 a crystal structure of native glutaryl-coa dehydrogenase from2 burkholderia pseudomallei Resolution 2.40 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	P	I	P	L	N	N	S	N	L	Y	L	S	D	G	A	L	C	E	A	V	T	R	E	G	A	G	W	D	S	D	F	L	A	S	I	G	Q	Q	L	G	T	A	E	S	L	E	L	G	R	L	A	N	V	N	P	P	E	L	L	R	Y	D	A	Q	G	R	R	L	D	D	V	R	F	H	P	A	W	H	L
Query Conservation
Alig confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	D	P	L	L	L	D	Q	Q	L	A	D	D	E	R	M	V	R	D	A	A	H	A	Y	A	Q	G	K	L	A	P	R	V	T	E	A	F	R	H	E	T	T	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	A
Template Known Secondary structure		T	S	T	T		G	G	G	G	S																			T											T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T
Template Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.																																				.	.
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.					.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure																																												.	.	.	.
Query SS confidence																																												.	.	.	.
Query Sequence		L	M	Q	A	L	C	T	N	R	V	H	N	L	A	W	E	E	D	A	R	S	G	A	F	V	A	R	A	A	R	F	M	L	H	A	Q	V	E	A	G	S	L	.	.	.	.	C	P	I	T	M	T	F	A	A	T	P	L	L	L	Q	M	L	P	A	P	F	Q	D	W	T	T	P	L	L	S	D	R	Y	D
Query Conservation																																												.	.	.	.
Alig confidence																																												.	.	.	.																																	.	.
Template Conservation																																																																																.	.
Template Sequence		I	F	R	E	M	G	E	I	G	L	L	G	P	T	I	P	E	Q	Y	G	G	P	G	L	D	Y	V	S	Y	G	L	I	A	R	E	V	E	R	V	D	S	G	Y	R	S	M	M	S	V	Q	S	S	L	V	M	V	P	I	F	E	F	G	S	D	A	Q	K	E	K	Y	L	P	K	L	A	T	G	E	.	.
Template Known Secondary structure									T	T		S	S	T	T	S		G	G	G	T	S																																T	T								S															T	S	.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220		.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure																																																								.
Query SS confidence																																																								.
Query Sequence		S	H	L	L	P	G	G	Q	K	R	G	L	L	I	G	M	G	M	T	E	K	Q	G	G	S	D	V	M	S	N	T	T	R	A	E	R	L	E	D	G	S	Y	R	L	V	G	H	K	W	F	F	S	V	P	.	Q	S	D	A	H	L	V	L	A	Q	T	A	G	G	L	S	C	F	F	V	P	R	F	L	P
Query Conservation																																																								.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.									.														.																	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.									.																															.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	W	I	G	C	F	G	L	T	E	P	S	M	V	T	.	.	.	.	.	.	.	R	A	R	K	V	P	G	G	.	Y	S	L	S	G	S	K	M	W	I	T	N	S	P	I	A	D	V	F	V	V	W	A	K	L	D	D	G	R	D	.	.	E	I	R	G	F	I	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	S														.	.	.	.	.	.	.						T	T		.												T	G	G	G		S														.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.									.																															.	.
Template SS confidence
													132	.	.	.	.	.	.	.	140	.	.	.	.	.								.	.	.	.	150	.	.	.		.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.			.	.	.	.	.	.	190
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.			280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure																																				.	.
Query SS confidence																																				.	.
Query Sequence		D	G	Q	R	N	A	I	R	L	E	R	L	K	D	K	L	G	N	R	S	N	A	S	C	E	V	E	F	Q	D	A	I	G	W	.	.	L	L	G	L	E	G	E	G	I	R	L	I	L	K	M	G	G	M	T	R	F	D	C	A	L	G	S	H	A	M	M	R	R	A	F	S	L	A	I	Y	H	A	H	Q
Query Conservation																																				.	.
Alig confidence																																				.	.
Template Conservation
Template Sequence		E	K	G	C	K	G	L	S	A	P	A	I	H	G	K	V	G	L	R	A	S	I	T	G	E	I	V	L	D	E	A	F	V	P	E	E	N	I	L	P	H	V	K	G	L	R	G	P	F	T	C	L	N	S	A	R	Y	G	I	A	W	G	A	L	G	A	A	E	S	C	W	H	I	A	R	Q	Y	V	L	D
Template Known Secondary structure			T	T		T	T										S	S		T	T	S														G	G	G	B		T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	H	V	F	G	N	P	L	I	Q	Q	P	L	M	R	H	V	L	S	R	M	A	L	Q	L	E	G	Q	T	A	L	L	F	R	L	A	R	A	W	D	R	R	A	D	A	K	E	A	L	W	A	R	L	F	T	P	A	A	K	F	V	I	C	K	R	G	M	P	F	V	A	E	A	M	E	V	L	G	G	I
Query Conservation
Alig confidence																																																.	.	.	.	.	.
Template Conservation																																																.	.	.	.	.	.
Template Sequence		R	K	Q	F	G	R	P	L	A	A	N	Q	L	I	Q	K	K	L	A	D	M	Q	T	E	I	T	L	G	L	Q	G	V	L	R	L	G	R	M	K	D	E	G	T	A	A	V	.	.	.	.	.	.	E	I	T	S	I	M	K	R	N	S	C	G	K	A	L	D	I	A	R	L	A	R	D	M	L	G	G	N
Template Known Secondary structure					T	T			G	G	G																																T				T	.	.	.	.	.	.
Template Predicted Secondary structure																																																.	.	.	.	.	.
Template SS confidence
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.							.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
		404	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Y	C	E	E	S	E	L	P	R	L	Y	R	E	M	P	V	N	S	I	W	E	G	S	G	N	I	M	C	L	D	V	L	R	V	L	N	K
Query Conservation
Alig confidence			.	.	.
Template Conservation			.	.	.
Template Sequence		D	.	.	.	E	F	G	V	A	R	H	L	V	N	L	E	V	V	N	T	Y	E	G	T	H	D	I	H	A	L	I	L	G	R	A	Q	T	G
Template Known Secondary structure			.	.	.	T	T													T	T	S	S	S															S
Template Predicted Secondary structure			.	.	.
Template SS confidence
		356				.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390